Guide to the Human Genome
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Name: ABI1 Sequence: fasta or formatted (508aa) NCBI GI: 61743942
Description:

abl-interactor 1 isoform a

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [481aa] abl-interactor 1 isoform b
alt prot [452aa] abl-interactor 1 isoform c
alt prot [476aa] abl-interactor 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         37           2
 C cysteine            0.4          2           1
 D aspartate           4.9         25           2
 E glutamate           4.7         24           3
 F phenylalanine       1.0          5           1
 G glycine             6.5         33           2
 H histidine           2.0         10           1
 I isoleucine          6.3         32           2
 K lysine              4.1         21           2
 L leucine             5.5         28           2
 M methionine          2.2         11           1
 N asparagine          5.3         27           2
 P proline            13.4         68           8
 Q glutamine           4.3         22           1
 R arginine            5.1         26           2
 S serine              9.1         46           3
 T threonine           7.5         38           2
 V valine              5.5         28           2
 W tryptophan          0.6          3           1
 Y tyrosine            4.3         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   abl-interactor 1 isoform a 
ABI1                  0.932   abl-interactor 1 isoform b 
ABI1                  0.915   abl-interactor 1 isoform d 
ABI1                  0.851   abl-interactor 1 isoform c 
ABI2                  0.656   abl interactor 2 
ABI3                  0.179   NESH protein isoform 1 
ABI3                  0.169   NESH protein isoform 2 
SF1                   0.054   splicing factor 1 isoform 1 
MUC2                  0.045   mucin 2 precursor 
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.040   sorbin and SH3 domain containing 2 isoform 4 
RAPH1                 0.040   Ras association and pleckstrin homology domains 1 is...
ITSN2                 0.039   intersectin 2 isoform 3 
ITSN2                 0.039   intersectin 2 isoform 1 
ITSN2                 0.039   intersectin 2 isoform 2 
KIAA1522              0.039   hypothetical protein LOC57648 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
ASAP1                 0.038   development and differentiation enhancing factor 1 [...
FLJ22184              0.038   PREDICTED: hypothetical protein LOC80164 
WIPF2                 0.037   WIRE protein 
PRR12                 0.037   proline rich 12 
GLTSCR1               0.036   glioma tumor suppressor candidate region gene 1 [Ho...
DIAPH1                0.036   diaphanous 1 isoform 2 
DIAPH1                0.036   diaphanous 1 isoform 1 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
SF1                   0.035   splicing factor 1 isoform 2 
ITSN1                 0.035   intersectin 1 isoform ITSN-s 
ITSN1                 0.035   intersectin 1 isoform ITSN-l 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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