Guide to the Human Genome
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Name: ABI1 Sequence: fasta or formatted (476aa) NCBI GI: 61743948
Description:

abl-interactor 1 isoform d

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [508aa] abl-interactor 1 isoform a
alt prot [481aa] abl-interactor 1 isoform b
alt prot [452aa] abl-interactor 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         33           2
 C cysteine            0.4          2           1
 D aspartate           5.3         25           2
 E glutamate           4.8         23           3
 F phenylalanine       1.1          5           1
 G glycine             6.7         32           2
 H histidine           2.1         10           1
 I isoleucine          6.3         30           2
 K lysine              4.0         19           2
 L leucine             5.0         24           2
 M methionine          2.3         11           1
 N asparagine          5.5         26           2
 P proline            12.4         59           8
 Q glutamine           4.6         22           1
 R arginine            5.5         26           2
 S serine              9.0         43           3
 T threonine           7.8         37           2
 V valine              5.3         25           2
 W tryptophan          0.4          2           1
 Y tyrosine            4.6         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   abl-interactor 1 isoform d 
ABI1                  0.994   abl-interactor 1 isoform b 
ABI1                  0.978   abl-interactor 1 isoform a 
ABI1                  0.907   abl-interactor 1 isoform c 
ABI2                  0.715   abl interactor 2 
ABI3                  0.263   NESH protein isoform 1 
ABI3                  0.253   NESH protein isoform 2 
SF1                   0.043   splicing factor 1 isoform 1 
ITSN2                 0.042   intersectin 2 isoform 3 
ITSN2                 0.042   intersectin 2 isoform 1 
ITSN2                 0.042   intersectin 2 isoform 2 
SETD1A                0.040   SET domain containing 1A 
ASAP1                 0.039   development and differentiation enhancing factor 1 [...
MUC2                  0.038   mucin 2 precursor 
ITSN1                 0.038   intersectin 1 isoform ITSN-s 
ITSN1                 0.038   intersectin 1 isoform ITSN-l 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
SH3RF1                0.037   SH3 domain containing ring finger 1 
HCLS1                 0.037   hematopoietic cell-specific Lyn substrate 1 
MYO1E                 0.036   myosin IE 
SORBS2                0.036   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.036   sorbin and SH3 domain containing 2 isoform 4 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
CCNK                  0.036   cyclin K isoform 1 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 3 
SHROOM3               0.035   shroom family member 3 protein 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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