Guide to the Human Genome
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Name: DCN Sequence: fasta or formatted (359aa) NCBI GI: 19743846
Description:

decorin isoform a preproprotein

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [250aa] decorin isoform b precursor
alt prot [212aa] decorin isoform c precursor
alt prot [172aa] decorin isoform d precursor
alt prot [75aa] decorin isoform e precursor
alt mRNA [359aa] decorin isoform a preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           2
 C cysteine            1.7          6           1
 D aspartate           5.0         18           2
 E glutamate           4.7         17           1
 F phenylalanine       3.6         13           1
 G glycine             6.7         24           2
 H histidine           2.5          9           1
 I isoleucine          5.8         21           2
 K lysine              7.5         27           2
 L leucine            13.4         48           4
 M methionine          1.4          5           1
 N asparagine          7.5         27           3
 P proline             6.4         23           2
 Q glutamine           4.2         15           2
 R arginine            3.6         13           1
 S serine              7.5         27           2
 T threonine           4.5         16           2
 V valine              6.4         23           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   decorin isoform a preproprotein 
DCN                   1.000   decorin isoform a preproprotein 
BGN                   0.533   biglycan preproprotein 
ASPN                  0.493   asporin 
DCN                   0.487   decorin isoform b precursor 
DCN                   0.381   decorin isoform c precursor 
DCN                   0.308   decorin isoform d precursor 
DCN                   0.182   decorin isoform e precursor 
PRELP                 0.175   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.175   proline arginine-rich end leucine-rich repeat protein...
LUM                   0.160   lumican precursor 
ECM2                  0.156   extracellular matrix protein 2 precursor 
PODN                  0.148   podocan 
FLRT3                 0.143   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.143   fibronectin leucine rich transmembrane protein 3 prec...
KERA                  0.140   keratocan 
PODNL1                0.139   podocan-like 1 isoform 2 
PODNL1                0.139   podocan-like 1 isoform 1 
LGR4                  0.138   leucine-rich repeat-containing G protein-coupled re...
FLRT1                 0.138   fibronectin leucine rich transmembrane protein 1 [Ho...
FMOD                  0.136   fibromodulin precursor 
LGR6                  0.135   leucine-rich repeat-containing G protein-coupled rec...
LRRC4C                0.132   netrin-G1 ligand 
LRRC4                 0.130   leucine rich repeat containing 4 
LGR5                  0.126   leucine-rich repeat-containing G protein-coupled rece...
OMD                   0.125   osteomodulin 
SLIT3                 0.120   slit homolog 3 
LRRC4B                0.120   leucine rich repeat containing 4B 
SLIT1                 0.120   slit homolog 1 
SLIT2                 0.115   slit homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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