Guide to the Human Genome
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Name: FLRT1 Sequence: fasta or formatted (674aa) NCBI GI: 34577057
Description:

fibronectin leucine rich transmembrane protein 1

Referenced in:

Fibronectin Family
Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         59           3
 C cysteine            1.9         13           1
 D aspartate           6.2         42           2
 E glutamate           4.3         29           2
 F phenylalanine       2.4         16           1
 G glycine             5.9         40           2
 H histidine           2.1         14           1
 I isoleucine          5.5         37           2
 K lysine              3.9         26           2
 L leucine            13.1         88           3
 M methionine          2.1         14           1
 N asparagine          5.9         40           3
 P proline             5.3         36           2
 Q glutamine           2.8         19           1
 R arginine            5.5         37           2
 S serine              6.4         43           2
 T threonine           8.9         60           3
 V valine              4.9         33           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.1         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin leucine rich transmembrane protein 1 [Ho... 
FLRT3                 0.539   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.539   fibronectin leucine rich transmembrane protein 3 prec...
FLRT2                 0.389   fibronectin leucine rich transmembrane protein 2 [Hom...
ASPN                  0.083   asporin 
LRRC4C                0.082   netrin-G1 ligand 
LRRC70                0.079   synleurin 
LRRC15                0.076   leucine rich repeat containing 15 isoform a 
LRRC15                0.076   leucine rich repeat containing 15 isoform b 
PODN                  0.076   podocan 
LRRC4B                0.075   leucine rich repeat containing 4B 
LRRC4                 0.073   leucine rich repeat containing 4 
DCN                   0.072   decorin isoform a preproprotein 
DCN                   0.072   decorin isoform a preproprotein 
PODNL1                0.072   podocan-like 1 isoform 2 
PODNL1                0.072   podocan-like 1 isoform 1 
FMOD                  0.071   fibromodulin precursor 
BGN                   0.070   biglycan preproprotein 
CPN2                  0.069   carboxypeptidase N, polypeptide 2, 83kD 
LRRTM4                0.066   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.066   leucine rich repeat transmembrane neuronal 4 isofor...
KERA                  0.066   keratocan 
LRRN3                 0.064   leucine rich repeat neuronal 3 
LRRN3                 0.064   leucine rich repeat neuronal 3 
LRRN3                 0.064   leucine rich repeat neuronal 3 
OMD                   0.063   osteomodulin 
LRRTM3                0.062   leucine rich repeat transmembrane neuronal 3 
CHAD                  0.061   chondroadherin precursor 
ECM2                  0.060   extracellular matrix protein 2 precursor 
LRRC24                0.060   leucine rich repeat containing 24 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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