Guide to the Human Genome
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Name: LGR5 Sequence: fasta or formatted (907aa) NCBI GI: 4504379
Description:

leucine-rich repeat-containing G protein-coupled receptor 5

Referenced in:

Leucine-rich Repeat Family
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         56           2
 C cysteine            2.9         26           2
 D aspartate           4.2         38           2
 E glutamate           3.9         35           2
 F phenylalanine       5.0         45           1
 G glycine             4.9         44           2
 H histidine           3.2         29           2
 I isoleucine          5.4         49           2
 K lysine              3.7         34           2
 L leucine            17.2        156           3
 M methionine          1.8         16           2
 N asparagine          5.5         50           2
 P proline             5.8         53           2
 Q glutamine           3.1         28           2
 R arginine            2.9         26           1
 S serine             10.4         94           3
 T threonine           5.2         47           1
 V valine              5.5         50           3
 W tryptophan          1.0          9           2
 Y tyrosine            2.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeat-containing G protein-coupled rece... 
LGR6                  0.528   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.503   leucine-rich repeat-containing G protein-coupled rec...
LGR4                  0.439   leucine-rich repeat-containing G protein-coupled re...
LGR6                  0.396   leucine-rich repeat-containing G protein-coupled rec...
FSHR                  0.098   follicle stimulating hormone receptor isoform 1 prec...
LHCGR                 0.097   luteinizing hormone/choriogonadotropin receptor pre...
TSHR                  0.092   thyroid stimulating hormone receptor isoform 1 precu...
FSHR                  0.089   follicle stimulating hormone receptor isoform 2 prec...
LRRC15                0.081   leucine rich repeat containing 15 isoform a 
LRRC15                0.081   leucine rich repeat containing 15 isoform b 
RXFP2                 0.071   relaxin/insulin-like family peptide receptor 2 [Homo...
IGFALS                0.070   insulin-like growth factor binding protein, acid la...
IGFALS                0.070   insulin-like growth factor binding protein, acid labi...
LRIG1                 0.068   leucine-rich repeats and immunoglobulin-like domains...
LRRC70                0.068   synleurin 
RXFP1                 0.067   relaxin/insulin-like family peptide receptor 1 [Homo...
LINGO3                0.067   leucine rich repeat and Ig domain containing 3 [Hom...
PODN                  0.064   podocan 
GP5                   0.064   glycoprotein V (platelet) 
LRIG3                 0.061   leucine-rich repeats and immunoglobulin-like domains...
SLIT1                 0.061   slit homolog 1 
LINGO2                0.061   leucine rich repeat and Ig domain containing 2 [Homo...
CPN2                  0.061   carboxypeptidase N, polypeptide 2, 83kD 
KIAA0644              0.059   hypothetical protein LOC9865 
LINGO1                0.056   leucine-rich repeat neuronal 6A 
SLIT3                 0.056   slit homolog 3 
SLIT2                 0.056   slit homolog 2 
LRRN2                 0.055   leucine rich repeat neuronal 2 
LRRN2                 0.055   leucine rich repeat neuronal 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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