Guide to the Human Genome
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Name: LRRC4 Sequence: fasta or formatted (653aa) NCBI GI: 15029530
Description:

leucine rich repeat containing 4

Referenced in:

Leucine-rich Repeat Family
Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         48           4
 C cysteine            2.3         15           2
 D aspartate           3.2         21           1
 E glutamate           5.2         34           2
 F phenylalanine       3.1         20           2
 G glycine             4.6         30           1
 H histidine           3.8         25           3
 I isoleucine          5.4         35           3
 K lysine              3.4         22           2
 L leucine            11.3         74           2
 M methionine          2.6         17           1
 N asparagine          6.3         41           2
 P proline             5.5         36           2
 Q glutamine           3.4         22           2
 R arginine            4.3         28           2
 S serine              7.8         51           2
 T threonine           8.7         57           2
 V valine              7.0         46           2
 W tryptophan          1.8         12           2
 Y tyrosine            2.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 4 
LRRC4B                0.544   leucine rich repeat containing 4B 
LRRC4C                0.527   netrin-G1 ligand 
LINGO4                0.113   leucine rich repeat and Ig domain containing 4 [Homo...
LINGO2                0.110   leucine rich repeat and Ig domain containing 2 [Homo...
LINGO3                0.101   leucine rich repeat and Ig domain containing 3 [Hom...
LINGO1                0.097   leucine-rich repeat neuronal 6A 
VASN                  0.088   slit-like 2 
LRIG1                 0.086   leucine-rich repeats and immunoglobulin-like domains...
CHAD                  0.084   chondroadherin precursor 
LRRN1                 0.082   leucine rich repeat neuronal 1 
LRRN3                 0.081   leucine rich repeat neuronal 3 
LRRN3                 0.081   leucine rich repeat neuronal 3 
LRRN3                 0.081   leucine rich repeat neuronal 3 
LRIG2                 0.081   leucine-rich repeats and immunoglobulin-like domains ...
LRFN4                 0.081   leucine rich repeat and fibronectin type III domain ...
LRRC15                0.080   leucine rich repeat containing 15 isoform a 
LRRC15                0.080   leucine rich repeat containing 15 isoform b 
LRFN5                 0.079   leucine rich repeat and fibronectin type III domain ...
LRRC70                0.079   synleurin 
PXDN                  0.078   peroxidasin 
CPN2                  0.077   carboxypeptidase N, polypeptide 2, 83kD 
LRFN2                 0.077   leucine rich repeat and fibronectin type III domain ...
FLRT3                 0.076   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.076   fibronectin leucine rich transmembrane protein 3 prec...
FLRT1                 0.076   fibronectin leucine rich transmembrane protein 1 [Ho...
CHADL                 0.075   chondroadherin-like 
PXDNL                 0.074   peroxidasin homolog-like 
FLRT2                 0.074   fibronectin leucine rich transmembrane protein 2 [Hom...
LRIG3                 0.074   leucine-rich repeats and immunoglobulin-like domains...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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