Guide to the Human Genome
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Name: ECM2 Sequence: fasta or formatted (699aa) NCBI GI: 4557543
Description:

extracellular matrix protein 2 precursor

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         23           1
 C cysteine            2.3         16           2
 D aspartate           4.3         30           3
 E glutamate          10.7         75           4
 F phenylalanine       3.3         23           2
 G glycine             5.4         38           2
 H histidine           2.3         16           1
 I isoleucine          6.7         47           2
 K lysine              5.3         37           2
 L leucine            11.6         81           2
 M methionine          1.9         13           1
 N asparagine          6.9         48           3
 P proline             6.6         46           3
 Q glutamine           4.4         31           3
 R arginine            6.3         44           2
 S serine              8.0         56           2
 T threonine           3.7         26           2
 V valine              3.7         26           1
 W tryptophan          0.3          2           1
 Y tyrosine            3.0         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   extracellular matrix protein 2 precursor 
PODN                  0.085   podocan 
ASPN                  0.083   asporin 
DCN                   0.078   decorin isoform a preproprotein 
DCN                   0.078   decorin isoform a preproprotein 
KERA                  0.078   keratocan 
PODNL1                0.076   podocan-like 1 isoform 2 
PODNL1                0.076   podocan-like 1 isoform 1 
BGN                   0.076   biglycan preproprotein 
FMOD                  0.072   fibromodulin precursor 
LUM                   0.071   lumican precursor 
PRELP                 0.071   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.071   proline arginine-rich end leucine-rich repeat protein...
OMD                   0.068   osteomodulin 
LGR4                  0.064   leucine-rich repeat-containing G protein-coupled re...
PODNL1                0.063   podocan-like 1 isoform 3 
FLRT3                 0.060   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.060   fibronectin leucine rich transmembrane protein 3 prec...
TLR8                  0.059   toll-like receptor 8 
CPN2                  0.059   carboxypeptidase N, polypeptide 2, 83kD 
FLRT1                 0.058   fibronectin leucine rich transmembrane protein 1 [Ho...
SHOC2                 0.055   soc-2 suppressor of clear homolog 
FLRT2                 0.055   fibronectin leucine rich transmembrane protein 2 [Hom...
GP5                   0.055   glycoprotein V (platelet) 
TLR7                  0.055   toll-like receptor 7 
SLIT3                 0.053   slit homolog 3 
SLIT2                 0.052   slit homolog 2 
LRIG3                 0.052   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.052   leucine-rich repeats and immunoglobulin-like domain...
LGR6                  0.049   leucine-rich repeat-containing G protein-coupled rec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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