Guide to the Human Genome
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Name: DCN Sequence: fasta or formatted (250aa) NCBI GI: 19743848
Description:

decorin isoform b precursor

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [359aa] decorin isoform a preproprotein
alt prot [212aa] decorin isoform c precursor
alt prot [172aa] decorin isoform d precursor
alt prot [75aa] decorin isoform e precursor
alt prot [359aa] decorin isoform a preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         14           2
 C cysteine            2.4          6           1
 D aspartate           4.8         12           2
 E glutamate           4.0         10           1
 F phenylalanine       4.0         10           1
 G glycine             8.0         20           2
 H histidine           2.8          7           1
 I isoleucine          5.6         14           2
 K lysine              4.8         12           2
 L leucine            12.0         30           4
 M methionine          1.2          3           1
 N asparagine          6.8         17           3
 P proline             6.4         16           2
 Q glutamine           4.4         11           2
 R arginine            4.0         10           1
 S serine              9.6         24           2
 T threonine           3.6          9           1
 V valine              6.4         16           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   decorin isoform b precursor 
DCN                   0.810   decorin isoform c precursor 
DCN                   0.701   decorin isoform a preproprotein 
DCN                   0.701   decorin isoform a preproprotein 
DCN                   0.472   decorin isoform d precursor 
BGN                   0.396   biglycan preproprotein 
ASPN                  0.386   asporin 
DCN                   0.258   decorin isoform e precursor 
PODNL1                0.107   podocan-like 1 isoform 3 
PODNL1                0.107   podocan-like 1 isoform 2 
PODNL1                0.107   podocan-like 1 isoform 1 
LUM                   0.101   lumican precursor 
PODN                  0.101   podocan 
SLIT1                 0.099   slit homolog 1 
ECM2                  0.097   extracellular matrix protein 2 precursor 
FLRT1                 0.097   fibronectin leucine rich transmembrane protein 1 [Ho...
FMOD                  0.097   fibromodulin precursor 
FLRT3                 0.093   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.093   fibronectin leucine rich transmembrane protein 3 prec...
PRELP                 0.093   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.093   proline arginine-rich end leucine-rich repeat protein...
PXDN                  0.091   peroxidasin 
SLIT3                 0.091   slit homolog 3 
KERA                  0.087   keratocan 
LRRC4C                0.085   netrin-G1 ligand 
SLIT2                 0.080   slit homolog 2 
LGR6                  0.080   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.080   leucine-rich repeat-containing G protein-coupled rec...
FLRT2                 0.080   fibronectin leucine rich transmembrane protein 2 [Hom...
OMD                   0.078   osteomodulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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