Guide to the Human Genome
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Name: SLIT3 Sequence: fasta or formatted (1523aa) NCBI GI: 11321571
Description:

slit homolog 3

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         81           2
 C cysteine            7.0        106           2
 D aspartate           5.1         77           2
 E glutamate           4.8         73           2
 F phenylalanine       2.9         44           2
 G glycine             6.9        105           2
 H histidine           2.8         43           2
 I isoleucine          4.7         72           1
 K lysine              5.0         76           2
 L leucine            11.2        171           4
 M methionine          1.1         16           1
 N asparagine          6.2         95           4
 P proline             5.9         90           3
 Q glutamine           4.4         67           2
 R arginine            5.6         85           2
 S serine              7.4        113           2
 T threonine           5.2         79           2
 V valine              5.8         89           2
 W tryptophan          0.6          9           1
 Y tyrosine            2.1         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit homolog 3 
SLIT2                 0.687   slit homolog 2 
SLIT1                 0.609   slit homolog 1 
CRB1                  0.060   crumbs homolog 1 precursor 
NOTCH2                0.060   notch 2 preproprotein 
JAG2                  0.058   jagged 2 isoform b precursor 
NOTCH1                0.057   notch1 preproprotein 
NOTCH3                0.056   Notch homolog 3 
JAG2                  0.056   jagged 2 isoform a precursor 
JAG1                  0.054   jagged 1 precursor 
NOTCH4                0.054   notch4 preproprotein 
CRB2                  0.053   crumbs homolog 2 
DLL4                  0.053   delta-like 4 protein precursor 
DLL1                  0.053   delta-like 1 
SVEP1                 0.051   polydom 
LRRC15                0.050   leucine rich repeat containing 15 isoform a 
LRRC15                0.050   leucine rich repeat containing 15 isoform b 
DNER                  0.049   delta-notch-like EGF repeat-containing transmembran...
EYS                   0.047   eyes shut homolog isoform 1 
SNED1                 0.046   6720455I24Rik homolog 
CPN2                  0.044   carboxypeptidase N, polypeptide 2, 83kD 
DLL3                  0.042   delta-like 3 protein isoform 1 precursor 
DLL3                  0.042   delta-like 3 protein isoform 2 precursor 
SLITRK6               0.041   slit and trk like 6 
LINGO1                0.039   leucine-rich repeat neuronal 6A 
PXDN                  0.037   peroxidasin 
DLK2                  0.036   EGF-like-domain, multiple 9 
DLK2                  0.036   EGF-like-domain, multiple 9 
FAT4                  0.036   FAT tumor suppressor homolog 4 
IGSF10                0.035   immunoglobulin superfamily, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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