Guide to the Human Genome
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Name: PODNL1 Sequence: fasta or formatted (512aa) NCBI GI: 226342931
Description:

podocan-like 1 isoform 1

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [510aa] podocan-like 1 isoform 2
alt prot [421aa] podocan-like 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         44           2
 C cysteine            1.4          7           1
 D aspartate           3.3         17           1
 E glutamate           3.9         20           1
 F phenylalanine       1.8          9           1
 G glycine             6.1         31           1
 H histidine           4.7         24           2
 I isoleucine          1.8          9           1
 K lysine              0.8          4           1
 L leucine            21.1        108           7
 M methionine          1.0          5           1
 N asparagine          5.5         28           2
 P proline             8.6         44           3
 Q glutamine           5.3         27           1
 R arginine            9.0         46           2
 S serine              6.6         34           2
 T threonine           4.1         21           2
 V valine              4.5         23           1
 W tryptophan          0.6          3           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   podocan-like 1 isoform 1 
PODNL1                0.985   podocan-like 1 isoform 2 
PODNL1                0.577   podocan-like 1 isoform 3 
PODN                  0.431   podocan 
IGFALS                0.130   insulin-like growth factor binding protein, acid labi...
IGFALS                0.130   insulin-like growth factor binding protein, acid la...
LRRC15                0.113   leucine rich repeat containing 15 isoform a 
LRRC15                0.113   leucine rich repeat containing 15 isoform b 
PRELP                 0.113   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.113   proline arginine-rich end leucine-rich repeat protein...
FMOD                  0.112   fibromodulin precursor 
KERA                  0.109   keratocan 
ECM2                  0.106   extracellular matrix protein 2 precursor 
LUM                   0.099   lumican precursor 
ASPN                  0.099   asporin 
DCN                   0.097   decorin isoform a preproprotein 
DCN                   0.097   decorin isoform a preproprotein 
FLRT3                 0.097   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.097   fibronectin leucine rich transmembrane protein 3 prec...
KIAA0644              0.096   hypothetical protein LOC9865 
FLRT1                 0.095   fibronectin leucine rich transmembrane protein 1 [Ho...
SLIT2                 0.095   slit homolog 2 
FLRT2                 0.095   fibronectin leucine rich transmembrane protein 2 [Hom...
LGR6                  0.095   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.095   leucine-rich repeat-containing G protein-coupled rec...
LGR5                  0.094   leucine-rich repeat-containing G protein-coupled rece...
BGN                   0.092   biglycan preproprotein 
LGR4                  0.088   leucine-rich repeat-containing G protein-coupled re...
CPN2                  0.088   carboxypeptidase N, polypeptide 2, 83kD 
LRRTM2                0.087   leucine rich repeat transmembrane neuronal 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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