Guide to the Human Genome
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Name: OMD Sequence: fasta or formatted (421aa) NCBI GI: 4826876
Description:

osteomodulin

Referenced in:

Bone and Related Tissues
Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          9           1
 C cysteine            2.1          9           1
 D aspartate           6.2         26           4
 E glutamate           7.1         30           2
 F phenylalanine       5.9         25           4
 G glycine             3.3         14           1
 H histidine           5.0         21           2
 I isoleucine          6.2         26           1
 K lysine              5.7         24           1
 L leucine            11.9         50           3
 M methionine          2.9         12           1
 N asparagine          7.8         33           2
 P proline             6.4         27           2
 Q glutamine           5.5         23           2
 R arginine            2.4         10           2
 S serine              6.2         26           2
 T threonine           3.8         16           1
 V valine              3.3         14           1
 W tryptophan          0.2          1           1
 Y tyrosine            5.9         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   osteomodulin 
KERA                  0.270   keratocan 
PRELP                 0.259   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.259   proline arginine-rich end leucine-rich repeat protein...
LUM                   0.245   lumican precursor 
FMOD                  0.233   fibromodulin precursor 
ASPN                  0.133   asporin 
FLRT3                 0.113   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.113   fibronectin leucine rich transmembrane protein 3 prec...
ECM2                  0.110   extracellular matrix protein 2 precursor 
DCN                   0.101   decorin isoform a preproprotein 
DCN                   0.101   decorin isoform a preproprotein 
PODN                  0.099   podocan 
FLRT1                 0.097   fibronectin leucine rich transmembrane protein 1 [Ho...
PODNL1                0.091   podocan-like 1 isoform 2 
PODNL1                0.091   podocan-like 1 isoform 1 
BGN                   0.090   biglycan preproprotein 
FLRT2                 0.088   fibronectin leucine rich transmembrane protein 2 [Hom...
CHAD                  0.084   chondroadherin precursor 
PODNL1                0.083   podocan-like 1 isoform 3 
TLR8                  0.083   toll-like receptor 8 
LRRC4C                0.078   netrin-G1 ligand 
VASN                  0.078   slit-like 2 
RXFP2                 0.074   relaxin/insulin-like family peptide receptor 2 [Homo...
IGFALS                0.074   insulin-like growth factor binding protein, acid la...
IGFALS                0.074   insulin-like growth factor binding protein, acid labi...
EPYC                  0.074   dermatan sulfate proteoglycan 3 precursor 
OPTC                  0.074   opticin precursor 
LRRC4B                0.073   leucine rich repeat containing 4B 
LRRC15                0.071   leucine rich repeat containing 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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