Guide to the Human Genome
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Name: PRELP Sequence: fasta or formatted (382aa) NCBI GI: 41349454
Description:

proline arginine-rich end leucine-rich repeat protein precursor

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [382aa] proline arginine-rich end leucine-rich repeat protein precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         11           1
 C cysteine            1.8          7           1
 D aspartate           4.5         17           1
 E glutamate           3.9         15           2
 F phenylalanine       4.2         16           1
 G glycine             3.7         14           1
 H histidine           2.9         11           1
 I isoleucine          6.0         23           1
 K lysine              3.7         14           1
 L leucine            15.4         59           4
 M methionine          1.6          6           2
 N asparagine          8.6         33           3
 P proline            12.8         49           3
 Q glutamine           3.7         14           1
 R arginine            7.9         30           2
 S serine              6.0         23           2
 T threonine           2.9         11           1
 V valine              4.2         16           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline arginine-rich end leucine-rich repeat protei... 
PRELP                 1.000   proline arginine-rich end leucine-rich repeat protein...
KERA                  0.446   keratocan 
FMOD                  0.312   fibromodulin precursor 
OMD                   0.290   osteomodulin 
LUM                   0.277   lumican precursor 
PODN                  0.161   podocan 
DCN                   0.159   decorin isoform a preproprotein 
DCN                   0.159   decorin isoform a preproprotein 
PODNL1                0.147   podocan-like 1 isoform 2 
PODNL1                0.147   podocan-like 1 isoform 1 
ASPN                  0.146   asporin 
BGN                   0.144   biglycan preproprotein 
ECM2                  0.127   extracellular matrix protein 2 precursor 
IGFALS                0.111   insulin-like growth factor binding protein, acid la...
IGFALS                0.111   insulin-like growth factor binding protein, acid labi...
PODNL1                0.111   podocan-like 1 isoform 3 
FLRT1                 0.098   fibronectin leucine rich transmembrane protein 1 [Ho...
RXFP1                 0.096   relaxin/insulin-like family peptide receptor 1 [Homo...
TLR8                  0.096   toll-like receptor 8 
LRRTM2                0.096   leucine rich repeat transmembrane neuronal 2 
FLRT3                 0.096   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.096   fibronectin leucine rich transmembrane protein 3 prec...
LRRC4B                0.095   leucine rich repeat containing 4B 
CHAD                  0.092   chondroadherin precursor 
KIAA0644              0.091   hypothetical protein LOC9865 
LRRTM3                0.087   leucine rich repeat transmembrane neuronal 3 
LGR5                  0.087   leucine-rich repeat-containing G protein-coupled rece...
FLRT2                 0.087   fibronectin leucine rich transmembrane protein 2 [Hom...
OPTC                  0.086   opticin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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