Guide to the Human Genome
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Name: BGN Sequence: fasta or formatted (368aa) NCBI GI: 4502403
Description:

biglycan preproprotein

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         14           1
 C cysteine            1.9          7           1
 D aspartate           6.0         22           2
 E glutamate           5.2         19           2
 F phenylalanine       4.3         16           1
 G glycine             6.5         24           2
 H histidine           3.0         11           1
 I isoleucine          4.9         18           1
 K lysine              6.2         23           2
 L leucine            14.9         55           2
 M methionine          2.2          8           2
 N asparagine          7.1         26           2
 P proline             6.5         24           2
 Q glutamine           3.0         11           1
 R arginine            4.9         18           1
 S serine              6.5         24           2
 T threonine           3.3         12           2
 V valine              5.7         21           2
 W tryptophan          1.1          4           1
 Y tyrosine            3.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   biglycan preproprotein 
ASPN                  0.510   asporin 
DCN                   0.509   decorin isoform a preproprotein 
DCN                   0.509   decorin isoform a preproprotein 
DCN                   0.263   decorin isoform b precursor 
DCN                   0.205   decorin isoform c precursor 
PRELP                 0.152   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.152   proline arginine-rich end leucine-rich repeat protein...
ECM2                  0.145   extracellular matrix protein 2 precursor 
LUM                   0.141   lumican precursor 
PODN                  0.135   podocan 
DCN                   0.131   decorin isoform d precursor 
KERA                  0.129   keratocan 
FLRT1                 0.127   fibronectin leucine rich transmembrane protein 1 [Ho...
PODNL1                0.126   podocan-like 1 isoform 2 
PODNL1                0.126   podocan-like 1 isoform 1 
FMOD                  0.120   fibromodulin precursor 
CHAD                  0.120   chondroadherin precursor 
PODNL1                0.118   podocan-like 1 isoform 3 
LRRTM4                0.115   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.115   leucine rich repeat transmembrane neuronal 4 isofor...
LGR4                  0.111   leucine-rich repeat-containing G protein-coupled re...
FLRT3                 0.111   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.111   fibronectin leucine rich transmembrane protein 3 prec...
FLRT2                 0.108   fibronectin leucine rich transmembrane protein 2 [Hom...
LRRC4C                0.107   netrin-G1 ligand 
LRRC4B                0.107   leucine rich repeat containing 4B 
SLIT2                 0.105   slit homolog 2 
LRRC70                0.105   synleurin 
OMD                   0.105   osteomodulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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