Guide to the Human Genome
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Name: FMOD Sequence: fasta or formatted (376aa) NCBI GI: 71040111
Description:

fibromodulin precursor

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         15           1
 C cysteine            1.6          6           1
 D aspartate           5.3         20           2
 E glutamate           5.1         19           1
 F phenylalanine       3.2         12           1
 G glycine             4.5         17           1
 H histidine           2.9         11           1
 I isoleucine          3.5         13           1
 K lysine              2.7         10           1
 L leucine            14.6         55           4
 M methionine          1.9          7           1
 N asparagine          8.0         30           2
 P proline             7.7         29           2
 Q glutamine           4.8         18           2
 R arginine            5.3         20           1
 S serine              8.5         32           3
 T threonine           4.0         15           1
 V valine              4.8         18           2
 W tryptophan          1.1          4           2
 Y tyrosine            6.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibromodulin precursor 
LUM                   0.377   lumican precursor 
PRELP                 0.318   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.318   proline arginine-rich end leucine-rich repeat protein...
KERA                  0.305   keratocan 
OMD                   0.265   osteomodulin 
PODNL1                0.148   podocan-like 1 isoform 2 
PODNL1                0.148   podocan-like 1 isoform 1 
ECM2                  0.132   extracellular matrix protein 2 precursor 
FLRT2                 0.130   fibronectin leucine rich transmembrane protein 2 [Hom...
FLRT3                 0.128   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.128   fibronectin leucine rich transmembrane protein 3 prec...
ASPN                  0.128   asporin 
DCN                   0.126   decorin isoform a preproprotein 
DCN                   0.126   decorin isoform a preproprotein 
FLRT1                 0.125   fibronectin leucine rich transmembrane protein 1 [Ho...
PODN                  0.122   podocan 
PODNL1                0.122   podocan-like 1 isoform 3 
BGN                   0.117   biglycan preproprotein 
IGFALS                0.090   insulin-like growth factor binding protein, acid la...
IGFALS                0.090   insulin-like growth factor binding protein, acid labi...
LRIG2                 0.087   leucine-rich repeats and immunoglobulin-like domains ...
LGR4                  0.086   leucine-rich repeat-containing G protein-coupled re...
LRIG3                 0.085   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.085   leucine-rich repeats and immunoglobulin-like domain...
LRRTM3                0.085   leucine rich repeat transmembrane neuronal 3 
CHAD                  0.083   chondroadherin precursor 
LRRTM1                0.082   leucine rich repeat transmembrane neuronal 1 
LGR6                  0.082   leucine-rich repeat-containing G protein-coupled rec...
KIAA0644              0.079   hypothetical protein LOC9865 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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