Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PCDH24 Sequence: fasta or formatted (1310aa) NCBI GI: 16933559
Description:

protocadherin LKC precursor

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9        104           2
 C cysteine            0.9         12           1
 D aspartate           7.6         99           3
 E glutamate           5.0         66           3
 F phenylalanine       3.7         48           2
 G glycine             6.4         84           2
 H histidine           1.2         16           1
 I isoleucine          4.7         62           2
 K lysine              2.4         31           1
 L leucine             9.9        130           3
 M methionine          1.5         19           1
 N asparagine          5.8         76           2
 P proline             5.6         73           2
 Q glutamine           4.4         57           1
 R arginine            3.4         45           1
 S serine              8.6        113           3
 T threonine           6.5         85           3
 V valine             10.8        141           3
 W tryptophan          0.7          9           1
 Y tyrosine            3.1         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin LKC precursor 
CDH23                 0.117   cadherin-like 23 isoform 1 precursor 
FAT4                  0.095   FAT tumor suppressor homolog 4 
PCDH21                0.094   protocadherin 21 precursor 
FAT1                  0.090   FAT tumor suppressor 1 precursor 
FAT3                  0.083   FAT tumor suppressor homolog 3 
CELSR2                0.081   cadherin EGF LAG seven-pass G-type receptor 2 
DCHS1                 0.078   dachsous 1 precursor 
CELSR3                0.074   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
DCHS2                 0.074   dachsous 2 isoform 1 
CDH23                 0.074   cadherin-like 23 isoform 2 precursor 
FAT2                  0.072   FAT tumor suppressor 2 precursor 
CELSR1                0.069   cadherin EGF LAG seven-pass G-type receptor 1 
PCDH9                 0.060   protocadherin 9 isoform 2 precursor 
PCDH9                 0.060   protocadherin 9 isoform 1 precursor 
DCHS2                 0.060   dachsous 2 isoform 2 
PCDH18                0.058   protocadherin 18 precursor 
PCDH11X               0.058   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.058   protocadherin 11 X-linked isoform d 
PCDH11X               0.058   protocadherin 11 X-linked isoform c 
PCDH11X               0.058   protocadherin 11 X-linked isoform b precursor 
PCDH15                0.058   protocadherin 15 isoform CD2-1 precursor 
PCDH1                 0.058   protocadherin 1 isoform 2 precursor 
PCDH1                 0.058   protocadherin 1 isoform 1 precursor 
PCDH15                0.057   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.057   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.057   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.057   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.057   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.057   protocadherin 15 isoform CD1-9 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press