IFFO1 9896

Name: IFFO1	Sequence: fasta or formatted (559aa)		NCBI GI: 18490978
Description: intermediate filament family orphan isoform 2		Referenced in: Cytoskeleton
Other entries for this name: alt prot [200aa] intermediate filament family orphan isoform 3 alt prot [563aa] intermediate filament family orphan isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 47 3 C cysteine 1.6 9 1 D aspartate 6.3 35 2 E glutamate 10.0 56 3 F phenylalanine 2.5 14 1 G glycine 6.8 38 3 H histidine 1.1 6 1 I isoleucine 3.0 17 1 K lysine 4.1 23 1 L leucine 10.6 59 3 M methionine 3.2 18 1 N asparagine 2.9 16 2 P proline 6.8 38 5 Q glutamine 5.9 33 2 R arginine 7.3 41 2 S serine 8.1 45 4 T threonine 4.5 25 2 V valine 4.5 25 2 W tryptophan 0.9 5 1 Y tyrosine 1.6 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intermediate filament family orphan isoform 2 IFFO1 0.991 intermediate filament family orphan isoform 4 IFFO2 0.473 intermediate filament family orphan 2 IFFO1 0.339 intermediate filament family orphan isoform 3 VIM 0.058 vimentin KRT73 0.054 keratin 73 KRT71 0.050 keratin 71 KRT78 0.048 keratin 5b KRT75 0.048 keratin 75 KRT8 0.046 keratin 8 KRT74 0.045 keratin 6 irs4 KRT5 0.043 keratin 5 KRT3 0.043 keratin 3 KRT4 0.042 keratin 4 NEFL 0.041 neurofilament, light polypeptide 68kDa KRT72 0.041 keratin 72 isoform 1 KRT72 0.041 keratin 72 isoform 1 NEFM 0.041 neurofilament, medium polypeptide 150kDa isoform 1 ... DES 0.040 desmin GFAP 0.039 glial fibrillary acidic protein isoform 2 GFAP 0.039 glial fibrillary acidic protein isoform 1 KRT6C 0.039 keratin 6C KRT76 0.039 keratin 76 KRT7 0.039 keratin 7 KRT6A 0.039 keratin 6A KRT1 0.038 keratin 1 KRT6B 0.038 keratin 6B KRT33A 0.036 keratin 33A KRT80 0.035 keratin 80 isoform a KRT80 0.035 keratin 80 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.