Guide to the Human Genome
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Name: KRT78 Sequence: fasta or formatted (520aa) NCBI GI: 89357932
Description:

keratin 5b

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         33           2
 C cysteine            2.7         14           2
 D aspartate           3.5         18           1
 E glutamate           9.2         48           3
 F phenylalanine       2.7         14           1
 G glycine             9.8         51           3
 H histidine           1.2          6           1
 I isoleucine          3.7         19           2
 K lysine              5.2         27           2
 L leucine            11.5         60           2
 M methionine          1.3          7           1
 N asparagine          2.7         14           2
 P proline             1.7          9           2
 Q glutamine           7.9         41           3
 R arginine            6.3         33           2
 S serine             11.3         59           2
 T threonine           5.2         27           1
 V valine              5.0         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 5b 
KRT4                  0.479   keratin 4 
KRT5                  0.471   keratin 5 
KRT6A                 0.470   keratin 6A 
KRT6C                 0.467   keratin 6C 
KRT6B                 0.466   keratin 6B 
KRT73                 0.460   keratin 73 
KRT75                 0.451   keratin 75 
KRT76                 0.447   keratin 76 
KRT79                 0.442   keratin 6L 
KRT1                  0.441   keratin 1 
KRT3                  0.438   keratin 3 
KRT72                 0.437   keratin 72 isoform 1 
KRT72                 0.437   keratin 72 isoform 1 
KRT71                 0.435   keratin 71 
KRT74                 0.434   keratin 6 irs4 
KRT77                 0.415   keratin 77 
KRT2                  0.411   keratin 2 
KRT7                  0.398   keratin 7 
KRT8                  0.391   keratin 8 
KRT72                 0.375   keratin 72 isoform 2 
KRT84                 0.348   keratin, hair, basic, 4 
KRT85                 0.344   keratin 85 
KRT82                 0.331   keratin 82 
KRT81                 0.326   keratin, hair, basic, 1 
LOC100293351          0.323   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.323   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.323   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.323   keratin 86 
KRT83                 0.322   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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