Guide to the Human Genome
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Name: KRT6C Sequence: fasta or formatted (564aa) NCBI GI: 155969697
Description:

keratin 6C

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         43           2
 C cysteine            0.9          5           1
 D aspartate           4.4         25           2
 E glutamate           6.9         39           2
 F phenylalanine       2.8         16           1
 G glycine            14.2         80           3
 H histidine           0.9          5           1
 I isoleucine          5.1         29           2
 K lysine              5.3         30           2
 L leucine             9.4         53           2
 M methionine          1.4          8           1
 N asparagine          4.3         24           2
 P proline             1.4          8           2
 Q glutamine           5.3         30           2
 R arginine            6.4         36           2
 S serine             10.8         61           4
 T threonine           4.4         25           3
 V valine              5.0         28           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 6C 
KRT6B                 0.994   keratin 6B 
KRT6A                 0.992   keratin 6A 
KRT5                  0.778   keratin 5 
KRT75                 0.697   keratin 75 
KRT3                  0.605   keratin 3 
KRT76                 0.587   keratin 76 
KRT1                  0.586   keratin 1 
KRT4                  0.571   keratin 4 
KRT2                  0.563   keratin 2 
KRT79                 0.558   keratin 6L 
KRT77                 0.521   keratin 77 
KRT73                 0.510   keratin 73 
KRT72                 0.503   keratin 72 isoform 1 
KRT72                 0.503   keratin 72 isoform 1 
KRT71                 0.502   keratin 71 
KRT74                 0.495   keratin 6 irs4 
KRT8                  0.461   keratin 8 
KRT84                 0.460   keratin, hair, basic, 4 
KRT7                  0.455   keratin 7 
KRT78                 0.431   keratin 5b 
KRT72                 0.428   keratin 72 isoform 2 
KRT85                 0.393   keratin 85 
KRT82                 0.392   keratin 82 
KRT81                 0.376   keratin, hair, basic, 1 
LOC100293351          0.372   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.372   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.372   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.372   keratin 86 
KRT83                 0.367   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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