Guide to the Human Genome
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Name: KRT80 Sequence: fasta or formatted (452aa) NCBI GI: 125628636
Description:

keratin 80 isoform a

Referenced in:

Keratins

Other entries for this name:
alt prot [422aa] keratin 80 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         37           2
 C cysteine            2.0          9           1
 D aspartate           4.4         20           1
 E glutamate          11.1         50           2
 F phenylalanine       2.4         11           1
 G glycine             5.1         23           1
 H histidine           0.9          4           1
 I isoleucine          3.5         16           1
 K lysine              8.0         36           3
 L leucine            10.8         49           2
 M methionine          2.0          9           1
 N asparagine          1.8          8           1
 P proline             2.4         11           1
 Q glutamine           7.1         32           2
 R arginine            6.0         27           1
 S serine             10.6         48           2
 T threonine           4.0         18           1
 V valine              6.9         31           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 80 isoform a 
KRT80                 0.914   keratin 80 isoform b 
KRT75                 0.370   keratin 75 
KRT8                  0.357   keratin 8 
KRT4                  0.353   keratin 4 
KRT5                  0.353   keratin 5 
KRT7                  0.347   keratin 7 
KRT6A                 0.347   keratin 6A 
KRT6C                 0.346   keratin 6C 
KRT6B                 0.344   keratin 6B 
KRT3                  0.343   keratin 3 
KRT76                 0.337   keratin 76 
KRT79                 0.337   keratin 6L 
KRT73                 0.333   keratin 73 
KRT84                 0.333   keratin, hair, basic, 4 
KRT1                  0.331   keratin 1 
KRT72                 0.331   keratin 72 isoform 1 
KRT72                 0.331   keratin 72 isoform 1 
KRT82                 0.331   keratin 82 
KRT71                 0.325   keratin 71 
KRT85                 0.324   keratin 85 
KRT2                  0.323   keratin 2 
KRT74                 0.320   keratin 6 irs4 
LOC100293351          0.310   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.310   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.310   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.310   keratin 86 
KRT81                 0.308   keratin, hair, basic, 1 
KRT83                 0.304   keratin 83 
KRT77                 0.303   keratin 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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