Guide to the Human Genome
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Name: KRT4 Sequence: fasta or formatted (594aa) NCBI GI: 109255249
Description:

keratin 4

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         42           2
 C cysteine            1.7         10           2
 D aspartate           4.2         25           1
 E glutamate           7.1         42           3
 F phenylalanine       3.7         22           1
 G glycine            10.9         65           3
 H histidine           0.7          4           1
 I isoleucine          4.4         26           2
 K lysine              6.4         38           2
 L leucine             9.4         56           2
 M methionine          2.0         12           1
 N asparagine          4.0         24           2
 P proline             2.4         14           1
 Q glutamine           5.7         34           3
 R arginine            5.7         34           3
 S serine             11.1         66           4
 T threonine           5.1         30           4
 V valine              6.2         37           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 4 
KRT5                  0.557   keratin 5 
KRT6A                 0.546   keratin 6A 
KRT3                  0.545   keratin 3 
KRT6C                 0.543   keratin 6C 
KRT6B                 0.542   keratin 6B 
KRT75                 0.534   keratin 75 
KRT76                 0.521   keratin 76 
KRT1                  0.509   keratin 1 
KRT77                 0.495   keratin 77 
KRT2                  0.494   keratin 2 
KRT79                 0.491   keratin 6L 
KRT73                 0.489   keratin 73 
KRT74                 0.478   keratin 6 irs4 
KRT72                 0.477   keratin 72 isoform 1 
KRT72                 0.477   keratin 72 isoform 1 
KRT71                 0.476   keratin 71 
KRT78                 0.421   keratin 5b 
KRT8                  0.412   keratin 8 
KRT7                  0.408   keratin 7 
KRT84                 0.377   keratin, hair, basic, 4 
KRT72                 0.367   keratin 72 isoform 2 
KRT85                 0.351   keratin 85 
LOC100293351          0.335   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.335   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.335   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.335   keratin 86 
KRT81                 0.334   keratin, hair, basic, 1 
KRT83                 0.333   keratin 83 
KRT82                 0.332   keratin 82 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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