Guide to the Human Genome
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Name: KRT5 Sequence: fasta or formatted (590aa) NCBI GI: 119395754
Description:

keratin 5

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         36           2
 C cysteine            0.7          4           1
 D aspartate           4.1         24           2
 E glutamate           6.9         41           2
 F phenylalanine       4.4         26           2
 G glycine            16.3         96           7
 H histidine           0.5          3           1
 I isoleucine          3.6         21           2
 K lysine              4.9         29           2
 L leucine             8.6         51           2
 M methionine          2.2         13           1
 N asparagine          4.7         28           2
 P proline             1.5          9           2
 Q glutamine           4.6         27           2
 R arginine            6.3         37           2
 S serine             11.5         68           4
 T threonine           4.4         26           2
 V valine              5.8         34           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 5 
KRT6A                 0.739   keratin 6A 
KRT6B                 0.738   keratin 6B 
KRT6C                 0.738   keratin 6C 
KRT75                 0.692   keratin 75 
KRT3                  0.616   keratin 3 
KRT76                 0.582   keratin 76 
KRT1                  0.581   keratin 1 
KRT4                  0.555   keratin 4 
KRT2                  0.549   keratin 2 
KRT77                 0.521   keratin 77 
KRT79                 0.516   keratin 6L 
KRT73                 0.491   keratin 73 
KRT74                 0.479   keratin 6 irs4 
KRT71                 0.477   keratin 71 
KRT72                 0.460   keratin 72 isoform 1 
KRT72                 0.460   keratin 72 isoform 1 
KRT84                 0.453   keratin, hair, basic, 4 
KRT7                  0.442   keratin 7 
KRT8                  0.442   keratin 8 
KRT78                 0.413   keratin 5b 
KRT72                 0.391   keratin 72 isoform 2 
KRT82                 0.377   keratin 82 
KRT85                 0.377   keratin 85 
KRT81                 0.363   keratin, hair, basic, 1 
LOC100293351          0.362   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.362   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.362   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.362   keratin 86 
KRT83                 0.355   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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