Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRT6A Sequence: fasta or formatted (564aa) NCBI GI: 5031839
Description:

keratin 6A

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         42           2
 C cysteine            0.9          5           1
 D aspartate           4.3         24           2
 E glutamate           7.1         40           2
 F phenylalanine       3.0         17           1
 G glycine            14.4         81           3
 H histidine           0.9          5           1
 I isoleucine          4.8         27           2
 K lysine              5.3         30           2
 L leucine             9.2         52           2
 M methionine          1.4          8           1
 N asparagine          4.3         24           2
 P proline             1.4          8           2
 Q glutamine           5.3         30           2
 R arginine            6.4         36           2
 S serine             10.6         60           4
 T threonine           4.6         26           3
 V valine              5.3         30           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 6A 
KRT6C                 0.990   keratin 6C 
KRT6B                 0.989   keratin 6B 
KRT5                  0.777   keratin 5 
KRT75                 0.699   keratin 75 
KRT3                  0.607   keratin 3 
KRT76                 0.592   keratin 76 
KRT1                  0.586   keratin 1 
KRT4                  0.572   keratin 4 
KRT2                  0.563   keratin 2 
KRT79                 0.559   keratin 6L 
KRT77                 0.523   keratin 77 
KRT73                 0.514   keratin 73 
KRT71                 0.504   keratin 71 
KRT72                 0.503   keratin 72 isoform 1 
KRT72                 0.503   keratin 72 isoform 1 
KRT74                 0.496   keratin 6 irs4 
KRT84                 0.464   keratin, hair, basic, 4 
KRT8                  0.462   keratin 8 
KRT7                  0.458   keratin 7 
KRT78                 0.433   keratin 5b 
KRT72                 0.429   keratin 72 isoform 2 
KRT82                 0.396   keratin 82 
KRT85                 0.393   keratin 85 
KRT81                 0.378   keratin, hair, basic, 1 
LOC100293351          0.373   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.373   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.373   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.373   keratin 86 
KRT83                 0.368   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press