IFFO1 36896

Name: IFFO1	Sequence: fasta or formatted (563aa)		NCBI GI: 89213250
Description: intermediate filament family orphan isoform 4		Referenced in: Cytoskeleton
Other entries for this name: alt prot [559aa] intermediate filament family orphan isoform 2 alt prot [200aa] intermediate filament family orphan isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 47 3 C cysteine 1.6 9 1 D aspartate 6.2 35 2 E glutamate 9.9 56 3 F phenylalanine 2.5 14 1 G glycine 6.7 38 3 H histidine 1.1 6 1 I isoleucine 3.0 17 1 K lysine 4.4 25 2 L leucine 10.7 60 3 M methionine 3.2 18 1 N asparagine 2.8 16 2 P proline 6.7 38 5 Q glutamine 6.0 34 2 R arginine 7.3 41 2 S serine 8.0 45 4 T threonine 4.4 25 2 V valine 4.4 25 2 W tryptophan 0.9 5 1 Y tyrosine 1.6 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intermediate filament family orphan isoform 4 IFFO1 0.985 intermediate filament family orphan isoform 2 IFFO2 0.465 intermediate filament family orphan 2 IFFO1 0.344 intermediate filament family orphan isoform 3 VIM 0.052 vimentin KRT73 0.052 keratin 73 KRT71 0.049 keratin 71 KRT78 0.046 keratin 5b KRT75 0.046 keratin 75 KRT8 0.045 keratin 8 KRT74 0.045 keratin 6 irs4 KRT5 0.041 keratin 5 KRT3 0.041 keratin 3 KRT4 0.041 keratin 4 NEFL 0.041 neurofilament, light polypeptide 68kDa KRT72 0.040 keratin 72 isoform 1 KRT72 0.040 keratin 72 isoform 1 NEFM 0.038 neurofilament, medium polypeptide 150kDa isoform 1 ... KRT6C 0.038 keratin 6C KRT6A 0.038 keratin 6A KRT7 0.037 keratin 7 GFAP 0.037 glial fibrillary acidic protein isoform 2 GFAP 0.037 glial fibrillary acidic protein isoform 1 DES 0.036 desmin KRT1 0.036 keratin 1 KRT76 0.036 keratin 76 KRT6B 0.036 keratin 6B PRPH 0.035 peripherin KRT2 0.034 keratin 2 KRT80 0.033 keratin 80 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.