Guide to the Human Genome
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Name: KRT80 Sequence: fasta or formatted (422aa) NCBI GI: 125628632
Description:

keratin 80 isoform b

Referenced in:

Keratins

Other entries for this name:
alt prot [452aa] keratin 80 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         35           2
 C cysteine            2.4         10           1
 D aspartate           4.7         20           1
 E glutamate          10.7         45           2
 F phenylalanine       2.4         10           1
 G glycine             4.7         20           1
 H histidine           0.9          4           1
 I isoleucine          3.3         14           1
 K lysine              6.9         29           2
 L leucine            12.1         51           2
 M methionine          1.9          8           1
 N asparagine          1.9          8           1
 P proline             2.8         12           1
 Q glutamine           7.3         31           2
 R arginine            5.9         25           1
 S serine              9.7         41           2
 T threonine           4.0         17           1
 V valine              6.9         29           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 80 isoform b 
KRT80                 0.974   keratin 80 isoform a 
KRT75                 0.393   keratin 75 
KRT8                  0.381   keratin 8 
KRT5                  0.375   keratin 5 
KRT4                  0.373   keratin 4 
KRT6A                 0.369   keratin 6A 
KRT6C                 0.368   keratin 6C 
KRT7                  0.368   keratin 7 
KRT6B                 0.367   keratin 6B 
KRT3                  0.366   keratin 3 
KRT79                 0.359   keratin 6L 
KRT76                 0.357   keratin 76 
KRT73                 0.353   keratin 73 
KRT82                 0.353   keratin 82 
KRT72                 0.352   keratin 72 isoform 1 
KRT72                 0.352   keratin 72 isoform 1 
KRT84                 0.351   keratin, hair, basic, 4 
KRT1                  0.351   keratin 1 
KRT71                 0.347   keratin 71 
KRT2                  0.343   keratin 2 
KRT85                 0.340   keratin 85 
KRT74                 0.340   keratin 6 irs4 
LOC100293351          0.330   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.330   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.330   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.330   keratin 86 
KRT81                 0.328   keratin, hair, basic, 1 
KRT83                 0.324   keratin 83 
KRT77                 0.323   keratin 77 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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