VIM 34173

Name: VIM	Sequence: fasta or formatted (466aa)		NCBI GI: 62414289
Description: vimentin		Referenced in: Cytoskeleton LIM Domain Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 33 2 C cysteine 0.2 1 1 D aspartate 6.2 29 2 E glutamate 11.8 55 3 F phenylalanine 2.1 10 1 G glycine 3.0 14 2 H histidine 1.3 6 2 I isoleucine 3.2 15 1 K lysine 4.7 22 2 L leucine 11.8 55 2 M methionine 2.1 10 1 N asparagine 4.9 23 2 P proline 1.9 9 1 Q glutamine 7.1 33 2 R arginine 9.2 43 2 S serine 9.2 43 4 T threonine 5.4 25 2 V valine 5.6 26 1 W tryptophan 0.2 1 1 Y tyrosine 2.8 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vimentin DES 0.607 desmin PRPH 0.549 peripherin GFAP 0.539 glial fibrillary acidic protein isoform 1 GFAP 0.495 glial fibrillary acidic protein isoform 2 INA 0.404 internexin neuronal intermediate filament protein, a... NEFL 0.381 neurofilament, light polypeptide 68kDa NEFM 0.370 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFH 0.311 neurofilament, heavy polypeptide 200kDa KRT8 0.277 keratin 8 KRT7 0.253 keratin 7 KRT75 0.250 keratin 75 KRT5 0.248 keratin 5 KRT1 0.247 keratin 1 KRT6C 0.246 keratin 6C KRT6B 0.245 keratin 6B KRT84 0.241 keratin, hair, basic, 4 KRT6A 0.241 keratin 6A KRT3 0.238 keratin 3 KRT79 0.236 keratin 6L KRT73 0.235 keratin 73 KRT4 0.231 keratin 4 KRT76 0.230 keratin 76 KRT71 0.230 keratin 71 LOC100293351 0.226 PREDICTED: hypothetical protein isoform 2 LOC100293351 0.226 PREDICTED: hypothetical protein isoform 1 LOC100293351 0.226 PREDICTED: hypothetical protein isoform 3 KRT86 0.226 keratin 86 KRT83 0.225 keratin 83 KRT74 0.225 keratin 6 irs4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.