Guide to the Human Genome
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Name: KRT7 Sequence: fasta or formatted (469aa) NCBI GI: 67782365
Description:

keratin 7

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         53           2
 C cysteine            0.2          1           1
 D aspartate           5.1         24           2
 E glutamate           9.6         45           2
 F phenylalanine       2.6         12           1
 G glycine             7.5         35           3
 H histidine           0.6          3           1
 I isoleucine          4.7         22           2
 K lysine              5.3         25           2
 L leucine            10.9         51           2
 M methionine          2.1         10           1
 N asparagine          4.1         19           2
 P proline             1.7          8           1
 Q glutamine           5.8         27           2
 R arginine            7.7         36           2
 S serine              9.8         46           3
 T threonine           3.8         18           1
 V valine              4.9         23           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 7 
KRT5                  0.579   keratin 5 
KRT75                 0.576   keratin 75 
KRT6A                 0.571   keratin 6A 
KRT6C                 0.566   keratin 6C 
KRT6B                 0.565   keratin 6B 
KRT8                  0.560   keratin 8 
KRT3                  0.535   keratin 3 
KRT4                  0.533   keratin 4 
KRT79                 0.525   keratin 6L 
KRT76                 0.524   keratin 76 
KRT73                 0.518   keratin 73 
KRT84                 0.512   keratin, hair, basic, 4 
KRT72                 0.510   keratin 72 isoform 1 
KRT72                 0.510   keratin 72 isoform 1 
KRT71                 0.502   keratin 71 
KRT1                  0.494   keratin 1 
KRT74                 0.481   keratin 6 irs4 
KRT77                 0.475   keratin 77 
KRT2                  0.468   keratin 2 
KRT85                 0.467   keratin 85 
KRT82                 0.466   keratin 82 
KRT78                 0.457   keratin 5b 
LOC100293351          0.442   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.442   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.442   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.442   keratin 86 
KRT81                 0.442   keratin, hair, basic, 1 
KRT83                 0.436   keratin 83 
KRT72                 0.401   keratin 72 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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