Guide to the Human Genome
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Name: KRT33A Sequence: fasta or formatted (404aa) NCBI GI: 14917117
Description:

keratin 33A

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         22           2
 C cysteine            5.4         22           1
 D aspartate           4.0         16           2
 E glutamate          11.4         46           2
 F phenylalanine       1.7          7           1
 G glycine             2.7         11           1
 H histidine           0.7          3           1
 I isoleucine          3.5         14           2
 K lysine              3.0         12           1
 L leucine            12.6         51           2
 M methionine          0.5          2           1
 N asparagine          6.9         28           1
 P proline             3.2         13           2
 Q glutamine           7.7         31           3
 R arginine            7.4         30           2
 S serine              9.7         39           3
 T threonine           5.4         22           2
 V valine              5.4         22           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 33A 
KRT33B                0.931   type I hair keratin 3B 
KRT31                 0.924   keratin 31 
KRT34                 0.856   keratin 34 
KRT35                 0.659   keratin 35 
KRT36                 0.648   keratin 36 
KRT32                 0.641   keratin 32 
KRT38                 0.594   keratin 38 
KRT40                 0.575   type I hair keratin KA36 
KRT37                 0.567   keratin 37 
KRT39                 0.548   type I hair keratin KA35 
KRT14                 0.452   keratin 14 
KRT16                 0.445   keratin 16 
KRT17                 0.443   keratin 17 
KRT15                 0.427   keratin 15 
KRT19                 0.427   keratin 19 
KRT13                 0.419   keratin 13 isoform a 
KRT13                 0.414   keratin 13 isoform b 
KRT10                 0.391   keratin 10 
KRT12                 0.390   keratin 12 
KRT20                 0.367   keratin 20 
KRT27                 0.358   keratin 27 
KRT28                 0.350   keratin 25D 
KRT24                 0.346   keratin 24 
KRT18                 0.341   keratin 18 
KRT18                 0.341   keratin 18 
KRT25                 0.339   keratin 25 
KRT9                  0.312   keratin 9 
KRT23                 0.310   keratin 23 
KRT26                 0.308   keratin 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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