IFFO1 36895

Name: IFFO1	Sequence: fasta or formatted (200aa)		NCBI GI: 89213247
Description: intermediate filament family orphan isoform 3		Referenced in: Cytoskeleton
Other entries for this name: alt prot [559aa] intermediate filament family orphan isoform 2 alt prot [563aa] intermediate filament family orphan isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 13 3 C cysteine 1.5 3 1 D aspartate 9.5 19 2 E glutamate 16.0 32 3 F phenylalanine 2.0 4 1 G glycine 4.0 8 2 H histidine 1.0 2 1 I isoleucine 2.5 5 1 K lysine 4.5 9 1 L leucine 8.0 16 3 M methionine 5.0 10 1 N asparagine 2.0 4 1 P proline 4.5 9 5 Q glutamine 5.0 10 2 R arginine 7.0 14 2 S serine 9.5 19 2 T threonine 6.0 12 1 V valine 2.5 5 1 W tryptophan 1.0 2 1 Y tyrosine 2.0 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intermediate filament family orphan isoform 3 IFFO1 1.000 intermediate filament family orphan isoform 4 IFFO1 0.981 intermediate filament family orphan isoform 2 IFFO2 0.491 intermediate filament family orphan 2 INA 0.085 internexin neuronal intermediate filament protein, a... VIM 0.085 vimentin LOC100129958 0.077 PREDICTED: similar to hCG1643231 LOC100129958 0.077 PREDICTED: similar to hCG1643231 NEFM 0.077 neurofilament, medium polypeptide 150kDa isoform 1 ... DES 0.077 desmin NEFL 0.072 neurofilament, light polypeptide 68kDa KRT8 0.066 keratin 8 GFAP 0.066 glial fibrillary acidic protein isoform 2 GFAP 0.066 glial fibrillary acidic protein isoform 1 KRT78 0.066 keratin 5b NEFH 0.066 neurofilament, heavy polypeptide 200kDa KRT74 0.064 keratin 6 irs4 KRT71 0.064 keratin 71 LMNB2 0.064 lamin B2 PRPH 0.064 peripherin KRT72 0.061 keratin 72 isoform 2 KRT80 0.058 keratin 80 isoform a KRT73 0.058 keratin 73 KRT80 0.058 keratin 80 isoform b KRT75 0.053 keratin 75 KRT72 0.053 keratin 72 isoform 1 KRT7 0.053 keratin 7 KRT79 0.053 keratin 6L KRT72 0.053 keratin 72 isoform 1 KRT39 0.053 type I hair keratin KA35 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.