Guide to the Human Genome
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Name: KRT71 Sequence: fasta or formatted (523aa) NCBI GI: 15618995
Description:

keratin 71

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         41           3
 C cysteine            1.7          9           1
 D aspartate           4.6         24           2
 E glutamate           9.0         47           3
 F phenylalanine       3.3         17           2
 G glycine             8.6         45           2
 H histidine           0.8          4           1
 I isoleucine          4.8         25           2
 K lysine              6.7         35           2
 L leucine            10.1         53           2
 M methionine          1.9         10           1
 N asparagine          5.0         26           2
 P proline             2.1         11           2
 Q glutamine           4.6         24           2
 R arginine            6.5         34           1
 S serine             11.3         59           4
 T threonine           3.1         16           1
 V valine              5.5         29           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 71 
KRT73                 0.820   keratin 73 
KRT74                 0.705   keratin 6 irs4 
KRT72                 0.684   keratin 72 isoform 1 
KRT72                 0.684   keratin 72 isoform 1 
KRT6A                 0.549   keratin 6A 
KRT6B                 0.549   keratin 6B 
KRT5                  0.547   keratin 5 
KRT6C                 0.546   keratin 6C 
KRT72                 0.544   keratin 72 isoform 2 
KRT4                  0.544   keratin 4 
KRT75                 0.544   keratin 75 
KRT1                  0.540   keratin 1 
KRT76                 0.538   keratin 76 
KRT3                  0.534   keratin 3 
KRT2                  0.520   keratin 2 
KRT77                 0.517   keratin 77 
KRT79                 0.516   keratin 6L 
KRT7                  0.439   keratin 7 
KRT78                 0.437   keratin 5b 
KRT8                  0.426   keratin 8 
KRT84                 0.420   keratin, hair, basic, 4 
KRT85                 0.395   keratin 85 
KRT82                 0.394   keratin 82 
KRT81                 0.381   keratin, hair, basic, 1 
LOC100293351          0.381   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.381   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.381   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.381   keratin 86 
KRT83                 0.378   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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