Guide to the Human Genome
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Name: C2orf28 Sequence: fasta or formatted (171aa) NCBI GI: 18105012
Description:

apoptosis related protein 3 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {284aa} apoptosis related protein 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          9           1
 C cysteine            6.4         11           2
 D aspartate           4.7          8           1
 E glutamate           1.8          3           1
 F phenylalanine       4.1          7           2
 G glycine             9.9         17           2
 H histidine           2.9          5           1
 I isoleucine          5.8         10           2
 K lysine              3.5          6           1
 L leucine            12.3         21           2
 M methionine          2.3          4           1
 N asparagine          7.6         13           2
 P proline             5.3          9           1
 Q glutamine           7.6         13           1
 R arginine            2.9          5           2
 S serine              4.7          8           1
 T threonine           7.6         13           2
 V valine              2.9          5           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apoptosis related protein 3 isoform a 
C2orf28               1.000   apoptosis related protein 3 isoform b 
DLK2                  0.047   EGF-like-domain, multiple 9 
DLK2                  0.047   EGF-like-domain, multiple 9 
DLK1                  0.041   delta-like 1 homolog 
JAG1                  0.035   jagged 1 precursor 
NOTCH3                0.032   Notch homolog 3 
VWDE                  0.029   von Willebrand factor D and EGF domains 
PEAR1                 0.029   platelet endothelial aggregation receptor 1 
JAG2                  0.029   jagged 2 isoform b precursor 
JAG2                  0.029   jagged 2 isoform a precursor 
NOTCH4                0.029   notch4 preproprotein 
NOTCH1                0.026   notch1 preproprotein 
CRB2                  0.026   crumbs homolog 2 
EYS                   0.023   eyes shut homolog isoform 1 
HSPG2                 0.023   heparan sulfate proteoglycan 2 
STAB1                 0.023   stabilin 1 precursor 
PROC                  0.021   protein C 
NOTCH2                0.021   notch 2 preproprotein 
ODZ2                  0.021   odz, odd Oz/ten-m homolog 2 
VWA2                  0.021   von Willebrand factor A domain containing 2 
FBN1                  0.021   fibrillin 1 precursor 
LRP1                  0.021   low density lipoprotein-related protein 1 
TNC                   0.021   tenascin C precursor 
COMP                  0.021   cartilage oligomeric matrix protein precursor 
STAB2                 0.021   stabilin 2 precursor 
NOTCH2NL              0.021   Notch homolog 2 N-terminal like protein 
SCUBE3                0.021   signal peptide, CUB domain, EGF-like 3 
ODZ4                  0.021   odz, odd Oz/ten-m homolog 4 
SNED1                 0.021   6720455I24Rik homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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