Guide to the Human Genome
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Name: NOTCH2NL Sequence: fasta or formatted (236aa) NCBI GI: 46397353
Description:

Notch homolog 2 N-terminal like protein

Referenced in:

Notch Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          8           1
 C cysteine           14.0         33           1
 D aspartate           4.2         10           1
 E glutamate           6.4         15           1
 F phenylalanine       3.8          9           1
 G glycine            11.4         27           2
 H histidine           3.4          8           1
 I isoleucine          0.4          1           1
 K lysine              3.0          7           1
 L leucine             5.1         12           1
 M methionine          1.3          3           1
 N asparagine          5.1         12           1
 P proline             4.7         11           1
 Q glutamine           5.9         14           1
 R arginine            4.2         10           2
 S serine              4.7         11           1
 T threonine          10.2         24           2
 V valine              4.2         10           1
 W tryptophan          1.3          3           1
 Y tyrosine            3.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Notch homolog 2 N-terminal like protein 
NOTCH2                0.891   notch 2 preproprotein 
NOTCH1                0.365   notch1 preproprotein 
NOTCH3                0.313   Notch homolog 3 
NOTCH4                0.299   notch4 preproprotein 
JAG2                  0.253   jagged 2 isoform b precursor 
SNED1                 0.251   6720455I24Rik homolog 
DLL1                  0.244   delta-like 1 
JAG2                  0.242   jagged 2 isoform a precursor 
JAG1                  0.240   jagged 1 precursor 
DNER                  0.238   delta-notch-like EGF repeat-containing transmembran...
CRB1                  0.230   crumbs homolog 1 precursor 
DLL4                  0.230   delta-like 4 protein precursor 
SVEP1                 0.226   polydom 
CRB2                  0.223   crumbs homolog 2 
DLK1                  0.221   delta-like 1 homolog 
EYS                   0.202   eyes shut homolog isoform 1 
SLIT2                 0.202   slit homolog 2 
SLIT1                 0.200   slit homolog 1 
DLL3                  0.198   delta-like 3 protein isoform 1 precursor 
DLL3                  0.198   delta-like 3 protein isoform 2 precursor 
FAT1                  0.194   FAT tumor suppressor 1 precursor 
DLK2                  0.192   EGF-like-domain, multiple 9 
DLK2                  0.192   EGF-like-domain, multiple 9 
FAT4                  0.192   FAT tumor suppressor homolog 4 
SLIT3                 0.177   slit homolog 3 
FAT3                  0.173   FAT tumor suppressor homolog 3 
LRP1B                 0.157   low density lipoprotein-related protein 1B precursor...
LRP1                  0.152   low density lipoprotein-related protein 1 
CUBN                  0.148   cubilin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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