Guide to the Human Genome
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Name: C2orf28 Sequence: fasta or formatted (284aa) NCBI GI: 47078300
Description:

apoptosis related protein 3 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {171aa} apoptosis related protein 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         25           3
 C cysteine            4.9         14           2
 D aspartate           3.2          9           1
 E glutamate           3.5         10           1
 F phenylalanine       2.8          8           2
 G glycine            10.9         31           2
 H histidine           2.8          8           1
 I isoleucine          3.9         11           2
 K lysine              3.9         11           1
 L leucine            12.0         34           3
 M methionine          2.1          6           1
 N asparagine          4.9         14           2
 P proline             7.4         21           2
 Q glutamine           5.6         16           1
 R arginine            5.3         15           2
 S serine              5.6         16           2
 T threonine           7.0         20           2
 V valine              3.2          9           1
 W tryptophan          1.1          3           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apoptosis related protein 3 isoform b 
C2orf28               0.598   apoptosis related protein 3 isoform a 
DLK2                  0.028   EGF-like-domain, multiple 9 
DLK2                  0.028   EGF-like-domain, multiple 9 
DLK1                  0.025   delta-like 1 homolog 
JAG1                  0.021   jagged 1 precursor 
NOTCH3                0.019   Notch homolog 3 
SGK493                0.019   protein kinase-like protein SgK493 
VWDE                  0.018   von Willebrand factor D and EGF domains 
PEAR1                 0.018   platelet endothelial aggregation receptor 1 
JAG2                  0.018   jagged 2 isoform b precursor 
JAG2                  0.018   jagged 2 isoform a precursor 
NOTCH4                0.018   notch4 preproprotein 
XYLT1                 0.016   xylosyltransferase I 
NOTCH1                0.016   notch1 preproprotein 
CRB2                  0.016   crumbs homolog 2 
LMO2                  0.014   LIM domain only 2 isoform 1 
MEGF8                 0.014   multiple EGF-like-domains 8 
EYS                   0.014   eyes shut homolog isoform 1 
ALPK3                 0.014   alpha-kinase 3 
FBN1                  0.014   fibrillin 1 precursor 
FAM156B               0.014   family with sequence similarity 156, member B [Homo...
FAM156A               0.014   family with sequence similarity 156, member A 
HSPG2                 0.014   heparan sulfate proteoglycan 2 
LOC100292319          0.014   PREDICTED: hypothetical protein 
LOC100290707          0.014   PREDICTED: hypothetical protein XP_002346482 
LOC100287810          0.014   PREDICTED: hypothetical protein XP_002342322 
STAB1                 0.014   stabilin 1 precursor 
AVEN                  0.014   cell death regulator aven 
PCSK6                 0.014   paired basic amino acid cleaving system 4 isoform e ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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