Guide to the Human Genome
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Name: FN1 Sequence: fasta or formatted (2296aa) NCBI GI: 47132553
Description:

fibronectin 1 isoform 5 preproprotein

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [2355aa] fibronectin 1 isoform 3 preproprotein
alt prot [657aa] fibronectin 1 isoform 7 preproprotein
alt prot [2176aa] fibronectin 1 isoform 6 preproprotein
alt prot [2421aa] fibronectin 1 isoform 2 preproprotein
alt prot [2330aa] fibronectin 1 isoform 4 preproprotein
alt prot [2477aa] fibronectin 1 isoform 1 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         92           2
 C cysteine            2.7         63           1
 D aspartate           4.8        110           2
 E glutamate           5.7        132           2
 F phenylalanine       2.1         49           1
 G glycine             8.4        192           2
 H histidine           2.1         49           2
 I isoleucine          4.6        106           2
 K lysine              3.3         76           2
 L leucine             5.4        123           4
 M methionine          1.1         26           2
 N asparagine          4.3         98           2
 P proline             8.0        183           3
 Q glutamine           5.4        124           2
 R arginine            5.3        121           2
 S serine              7.9        182           3
 T threonine          10.9        251           3
 V valine              8.0        184           3
 W tryptophan          1.7         38           1
 Y tyrosine            4.2         97           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin 1 isoform 5 preproprotein 
FN1                   0.855   fibronectin 1 isoform 4 preproprotein 
FN1                   0.820   fibronectin 1 isoform 6 preproprotein 
FN1                   0.734   fibronectin 1 isoform 3 preproprotein 
FN1                   0.622   fibronectin 1 isoform 1 preproprotein 
FN1                   0.622   fibronectin 1 isoform 2 preproprotein 
FN1                   0.297   fibronectin 1 isoform 7 preproprotein 
TNC                   0.070   tenascin C precursor 
TNR                   0.069   tenascin R 
COL12A1               0.066   collagen, type XII, alpha 1 long isoform precursor [...
TNN                   0.058   tenascin N 
TNXB                  0.054   tenascin XB isoform 1 precursor 
COL12A1               0.054   collagen, type XII, alpha 1 short isoform precursor ...
COL7A1                0.042   alpha 1 type VII collagen precursor 
COL14A1               0.037   collagen, type XIV, alpha 1 
COL20A1               0.028   collagen, type XX, alpha 1 
PTPRB                 0.027   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.027   protein tyrosine phosphatase, receptor type, B isof...
PTPRS                 0.027   protein tyrosine phosphatase, receptor type, sigma ...
SDK2                  0.026   sidekick 2 
TTN                   0.026   titin isoform N2-A 
TTN                   0.026   titin isoform novex-2 
TTN                   0.026   titin isoform novex-1 
TTN                   0.026   titin isoform N2-B 
PTPRD                 0.026   protein tyrosine phosphatase, receptor type, D isofo...
MMP2                  0.025   matrix metalloproteinase 2 isoform b 
MMP2                  0.025   matrix metalloproteinase 2 isoform a preproprotein [...
PTPRS                 0.025   protein tyrosine phosphatase, receptor type, sigma ...
MMP9                  0.025   matrix metalloproteinase 9 preproprotein 
PTPRF                 0.025   protein tyrosine phosphatase, receptor type, F isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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