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Search of human proteins with 169213239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
(755 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 1619 0.0
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 1618 0.0
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 1613 0.0
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 72 2e-12
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 66 1e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 65 2e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 65 2e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens] 59 2e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 59 2e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 58 4e-08
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 57 5e-08
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 57 8e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 57 8e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 57 8e-08
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 56 1e-07
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 55 2e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 55 3e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 55 3e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 55 3e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 54 4e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 53 9e-07
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 53 9e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 53 9e-07
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 53 1e-06
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 52 2e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 52 2e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 52 2e-06
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 52 2e-06
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 52 2e-06
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 52 2e-06
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 1619 bits (4192), Expect = 0.0
Identities = 755/755 (100%), Positives = 755/755 (100%)
Query: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG
Sbjct: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
Query: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV
Sbjct: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
Query: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC
Sbjct: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
Query: 181 CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE
Sbjct: 181 CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
Query: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT
Sbjct: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
Query: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH
Sbjct: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
Query: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM
Sbjct: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
Query: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG
Sbjct: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
Query: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM 540
GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM
Sbjct: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM 540
Query: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP
Sbjct: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
Query: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT
Sbjct: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
Query: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS
Sbjct: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
Query: 721 PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL 755
PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL
Sbjct: 721 PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL 755
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 1618 bits (4189), Expect = 0.0
Identities = 754/755 (99%), Positives = 755/755 (100%)
Query: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG
Sbjct: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
Query: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV
Sbjct: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
Query: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC
Sbjct: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
Query: 181 CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
CAHPVRPAGH+ACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE
Sbjct: 181 CAHPVRPAGHVACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
Query: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT
Sbjct: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
Query: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH
Sbjct: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
Query: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM
Sbjct: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
Query: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG
Sbjct: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
Query: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM 540
GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM
Sbjct: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM 540
Query: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP
Sbjct: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
Query: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT
Sbjct: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
Query: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS
Sbjct: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
Query: 721 PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL 755
PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL
Sbjct: 721 PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL 755
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 1613 bits (4177), Expect = 0.0
Identities = 752/755 (99%), Positives = 753/755 (99%)
Query: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG
Sbjct: 1 MCSQQAHTFPCSMAMRAWETTITDVRLSWEIRGRGHCVLDRPHSERTVWVHVGGPGCADG 60
Query: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV
Sbjct: 61 KTWSRVATVLGHSARLSWDRNYLVITGAWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGV 120
Query: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC
Sbjct: 121 GCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC 180
Query: 181 CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
CAHPVRPAGH+ACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE
Sbjct: 181 CAHPVRPAGHVACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
Query: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT
Sbjct: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGT 300
Query: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH
Sbjct: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
Query: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM
Sbjct: 361 SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSM 420
Query: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG
Sbjct: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSG 480
Query: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWLTLGQEIACSLRYVGDIISM 540
GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPW TLGQEIACSLRYVGDIISM
Sbjct: 481 GSWGETQSPEAGAQGNHVFCVDFAISGGKEDSHRLARSPWPTLGQEIACSLRYVGDIISM 540
Query: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP
Sbjct: 541 ATETGGNIVFFPLLAVRMWSRDDHTCGIIRENTMARHPRTAGSFPAFKTEMQPSADTQQP 600
Query: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT
Sbjct: 601 TPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRKGLFPPTQKNALQIATPT 660
Query: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS
Sbjct: 661 IPMADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFPSSAASEQGLELCRPGSGKKGAMAS 720
Query: 721 PQPFLVCGVSSPKTPARPPEGFGHKVPKHPSESSL 755
PQPFLVCGVSSPKTP RPPEGFGHKVPKHPSESSL
Sbjct: 721 PQPFLVCGVSSPKTPQRPPEGFGHKVPKHPSESSL 755
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 71.6 bits (174), Expect = 2e-12
Identities = 100/363 (27%), Positives = 125/363 (34%), Gaps = 57/363 (15%)
Query: 91 GGPGNWRAEGETEAPLTVG--RDSGLEAGVGVGCGLRTAQ-PAGFELLAWQHPQKPPGGP 147
G PG G+ P G D GL VG GL+ + P G P P G P
Sbjct: 1039 GDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGA-LGLKGNEGPPG--------PPGPAGSP 1089
Query: 148 QRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-PVRPAGHLACGAGIWTRAQAGP- 205
P G GP + G +GP G + G P PAG + AGP
Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV 1149
Query: 206 -------HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPC 257
K +G G S G + P PTGP+ P +P P P
Sbjct: 1150 GPPGEDGDKGEIG-EPGQKGSKGDKGEQGP-----PGPTGPQGPIGQPGPSGADGEPGPR 1203
Query: 258 WGAG-HSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
G Q +G G G G+P ++ + G G + GPPG
Sbjct: 1204 GQQGLFGQKGDEGPRGFPGPPGPVGLQGLPG-PPGEKGETGDVGQMGPPGPPGPRGPSGA 1262
Query: 316 PGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH--- 372
PGA G + P G G V +G PG E +PG GG P RG
Sbjct: 1263 PGADGPQGP-----PGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPS 1317
Query: 373 ----------PKGNCSPGSSPG----FGELWPLGQQCPCVAQGPHG----GGKPSQALAA 414
P G+ P SPG G+ P G+ P GP G G+P Q +
Sbjct: 1318 GAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Query: 415 GPT 417
GPT
Sbjct: 1378 GPT 1380
Score = 49.3 bits (116), Expect = 1e-05
Identities = 73/278 (26%), Positives = 91/278 (32%), Gaps = 33/278 (11%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P +P P G RGP G RGP+G K G P G+ + G
Sbjct: 901 GTPGKPGPRGQRGPTGPRGE---RGPRGITGKPG--------PKGNSGGDGPAGPPGERG 949
Query: 205 PH--KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
P+ + G +P P + TG + + P P+ G
Sbjct: 950 PNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTG--- 1006
Query: 263 SQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSK--CGKCGTVPTQGPPGTNPQCAMPGAS 319
+T G G G + G+P L + +K G G GPPG PG
Sbjct: 1007 -ETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLR---GFPGDR 1062
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G P+ G G GPPG G G PI G R P+G P
Sbjct: 1063 GLPGPVGA-----LGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPG--RPGPQGPPGP 1115
Query: 380 GSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGP 416
G GE P G QGP G P A GP
Sbjct: 1116 AGEKGAPGEKGPQGPAGRDGLQGP--VGLPGPAGPVGP 1151
Score = 47.0 bits (110), Expect = 7e-05
Identities = 75/277 (27%), Positives = 79/277 (28%), Gaps = 45/277 (16%)
Query: 135 LAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPA------ 188
LA + P P G RP P G G L G GPQG G P PA
Sbjct: 555 LALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQG-----PPGPAGKPGRR 609
Query: 189 GHLACGAGIWTRAQAGPH-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHA 247
G Q GP R AG G P P GP
Sbjct: 610 GRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRG-----DPGPSGPPGPPGDDGERG 664
Query: 248 LSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPP 307
PR G G G +G P + G G V QG P
Sbjct: 665 DDGEVGPRGLPG-------EPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEP 717
Query: 308 GTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG 367
G Q PGA G P G G +GP G MPGA G
Sbjct: 718 GPPGQQGNPGAQGLPGP--------QGAIGPPGEKGPLGKPGLPGMPGADGP-------- 761
Query: 368 RYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
HP PG G G P G Q P GP G
Sbjct: 762 --PGHPGKEGPPGEKGGQG---PPGPQGPIGYPGPRG 793
Score = 46.2 bits (108), Expect = 1e-04
Identities = 73/277 (26%), Positives = 85/277 (30%), Gaps = 39/277 (14%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWR-GPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
PPG P P GL GP P+R G G G + A + A + R
Sbjct: 500 PPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRG 559
Query: 202 QAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG 261
AGP +G S + +P P GP P P P G
Sbjct: 560 PAGP----MGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGP--------PGPAGKPG 607
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
R+G + G RG P+ G G G PG PG SG
Sbjct: 608 -----RRGRAGSDGARGMPGQTGPK---------GDRGFDGLAGLPGEKGHRGDPGPSGP 653
Query: 322 RSPIA-TRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR-YRSHPKGNCSP 379
P R G+ G G PG G G P G + PKGN P
Sbjct: 654 PGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGP 713
Query: 380 GSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGP 416
PG P GQQ P G P A GP
Sbjct: 714 QGEPG-----PPGQQ-----GNPGAQGLPGPQGAIGP 740
Score = 45.1 bits (105), Expect = 2e-04
Identities = 95/392 (24%), Positives = 114/392 (29%), Gaps = 77/392 (19%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV-------RPAGHLACGAG 196
PG P P GL G G+ GP G K G P G L
Sbjct: 1017 PGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGN 1076
Query: 197 IWTRAQAGP-HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-------------PS 242
GP AGAA G +P +P Q P GP P+
Sbjct: 1077 EGPPGPPGPAGSPGERGPAGAAGPIG-----IPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1131
Query: 243 SRPHALSTAASPRPCWGAG----HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKC 298
R P P G G +G++G + P + G+
Sbjct: 1132 GRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQP 1191
Query: 299 GTVPTQGPPGTNPQCAMPGASGTRSPIA----------------TRRRSKCGKCGTVTAQ 342
G G PG Q + G G P + + G G +
Sbjct: 1192 GPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPP 1251
Query: 343 GPPGTHAECAMPGAGGTHSPIAARGRYRS-HPKGNCSPGSSPGF-GELWPLGQQCPCVAQ 400
GPPG PGA G P G + KG PG GE P G P +
Sbjct: 1252 GPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPG---PKGER 1308
Query: 401 GPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGS---CHFPS 457
G G PS AAGP PK PP GDD GS FP
Sbjct: 1309 GEKGESGPSG--AAGPPG----------------PKGPP-----GDDGPKGSPGPVGFPG 1345
Query: 458 SFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP 489
G +G G + G G+T SP
Sbjct: 1346 DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Score = 44.3 bits (103), Expect = 4e-04
Identities = 91/371 (24%), Positives = 113/371 (30%), Gaps = 63/371 (16%)
Query: 128 QPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRP 187
+P LL + P PPG P G GP+ G GP G G
Sbjct: 677 EPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPG--------- 727
Query: 188 AGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHA 247
+ GP GA + L +P P + P G P
Sbjct: 728 -----------AQGLPGPQ----GAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP-- 770
Query: 248 LSTAASPRPCWGAGHSQTWRQGAGEAQGTRG-GSADGIPEL--TCYQRSKCGKCGTVPTQ 304
P G QG G RG ADGI L T ++ + G G
Sbjct: 771 --------PGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDM 822
Query: 305 GPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIA 364
G G + PG G P + R G G GPPG + +PG G
Sbjct: 823 GIKGDRGEIGPPGPRGEDGPEGPKGRG--GPNGDPGPLGPPGEKGKLGVPGLPGYPGRQG 880
Query: 365 ARGR--YRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG----GGKPSQALAAGPTV 418
+G + P N G G+ P GQ+ P +G G GKP GP
Sbjct: 881 PKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKP------GP-- 932
Query: 419 SMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRR 478
+G S P PP G + G FP G G GQR
Sbjct: 933 --------KGNSGGDGPAGPPGE--RGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRG 982
Query: 479 SGGSWGETQSP 489
G G+T P
Sbjct: 983 ETGFQGKTGPP 993
Score = 42.0 bits (97), Expect = 0.002
Identities = 65/247 (26%), Positives = 82/247 (33%), Gaps = 29/247 (11%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P P P G GP G G GS +G P P G A
Sbjct: 1347 PGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE--PGPSGPPGKRG------PPGPA 1398
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPS-SRPHALSTAASPRPCWGAGH 262
GP R GA +GL P P GP+ + +P P P G
Sbjct: 1399 GPEGRQ--GEKGAKGEAGLEGP-----PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGL 1451
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELT--CYQRSKCGKCGTVPTQGPPGTNPQCA---MPG 317
+ G G G G+P L + + G G + GPPG + +PG
Sbjct: 1452 PGS--PGPDGPPGPMG--PPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1507
Query: 318 ASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNC 377
G+ P + G G + GPPG GA G+ P +G HP G
Sbjct: 1508 PQGSSGPKG--EQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGE-AGHP-GPP 1563
Query: 378 SPGSSPG 384
P PG
Sbjct: 1564 GPPGPPG 1570
Score = 41.2 bits (95), Expect = 0.004
Identities = 54/223 (24%), Positives = 68/223 (30%), Gaps = 40/223 (17%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P G G + G+ G +G K+G P+ P G
Sbjct: 1385 PSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG-----PIGPQG---------- 1429
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCW 258
A P + G GL P S P GP P P P
Sbjct: 1430 -APGKPGPDGLRGIPGPVGEQGL--------PGSPGPDGPPGPMGPPGLPGLKGDSGPKG 1480
Query: 259 GAGH-------SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNP 311
GH QG +G G P+ ++ G G + GPPG
Sbjct: 1481 EKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPK---GEQGITGPSGPIGPPGPPGLPG 1537
Query: 312 QCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMP 354
GA G+ P + G+ G GPPG E P
Sbjct: 1538 PPGPKGAKGSSGPTGPK-----GEAGHPGPPGPPGPPGEVIQP 1575
Score = 40.8 bits (94), Expect = 0.005
Identities = 86/340 (25%), Positives = 108/340 (31%), Gaps = 66/340 (19%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P P GL+G L G +G G + + G P P G
Sbjct: 1217 PRGFPGPPGPVGLQG---LPGPPGEKGETGDVGQMG-----PPGPPGPRGPSGAPGADGP 1268
Query: 203 AGP-----HKRAVGAAA--GAAQSSGLFSKWVPCQPLSQH-------PTG----PEPSSR 244
GP + AVG G A GL + P P + P+G P P
Sbjct: 1269 QGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGP 1328
Query: 245 PHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQ 304
P SP P G G G G DG P + G+ G +
Sbjct: 1329 PGDDGPKGSPGPVGFPGDP-----GPPGEPGPAG--QDGPPG----DKGDDGEPGQTGSP 1377
Query: 305 GPPGTNPQCAMPGASGTRSPIATR-RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPI 363
GP G PG G P R+ + G G +GPPG GA G P
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPD 1437
Query: 364 AARG-------------RYRSHPKGNCSPGSSPGF-GELWPLGQQ---------CPCVAQ 400
RG P G P PG G+ P G++ P Q
Sbjct: 1438 GLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQ 1497
Query: 401 GPHGG-GKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPP 439
G G G P ++GP G + + G S + P PP
Sbjct: 1498 GEKGDRGLPGPQGSSGPK----GEQGITGPSGPIGPPGPP 1533
Score = 38.1 bits (87), Expect = 0.030
Identities = 74/268 (27%), Positives = 88/268 (32%), Gaps = 56/268 (20%)
Query: 262 HSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+ T +G G +G +G + I E G G GPPGT G G
Sbjct: 437 NQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPG 496
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGG---------------------T 359
R P + G G GPPGT GG
Sbjct: 497 ERGP-----PGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQ 551
Query: 360 HSPIAARG-------RYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQA 411
+ +A RG R P G PGS GE +G Q P QGP G GKP +
Sbjct: 552 QARLALRGPAGPMGLTGRPGPVG--PPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRR 609
Query: 412 LAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQR-CLSPSIQT 470
AG G R + G + PK GD F G P G R PS
Sbjct: 610 GRAGSD----GARGMPGQTG---PK--------GDRGFDGLAGLPGEKGHRGDPGPSGPP 654
Query: 471 N--GGDGQRRSGGSWGETQSP-EAGAQG 495
G DG+R G G P E G +G
Sbjct: 655 GPPGDDGERGDDGEVGPRGLPGEPGPRG 682
Score = 32.7 bits (73), Expect = 1.3
Identities = 44/174 (25%), Positives = 54/174 (31%), Gaps = 27/174 (15%)
Query: 584 FPAFKTEMQPSADTQQPTPPGPNHRGKRTANRYTHHPHGGQRALPVHMADAIGHGRADRK 643
FP FK +M D + PPGP R P G + G D
Sbjct: 815 FPGFKGDMGIKGDRGEIGPPGP---------RGEDGPEGPK---------GRGGPNGDPG 856
Query: 644 GLFPPTQKNALQIATPTIP-------MADSVHFPSTRQMLGLAEGLVMPSEHSRNAMRFP 696
L PP +K L + P +P S+ FP G G P + R P
Sbjct: 857 PLGPPGEKGKLGV--PGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGP 914
Query: 697 SSAASEQGLELCRPGSGKKGAMASPQPFLVCGVSSPKTPARPPEGFGHKVPKHP 750
+ E+G G KG P G P P P G K P P
Sbjct: 915 TGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGP 968
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 65.9 bits (159), Expect = 1e-10
Identities = 112/412 (27%), Positives = 135/412 (32%), Gaps = 90/412 (21%)
Query: 112 SGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGS-----SP 166
SGL+ G A PAG P+ PG P G GPR L G +P
Sbjct: 271 SGLDGAKG------DAGPAG--------PKGEPGSPGENGAPGQMGPRGLPGERGRPGAP 316
Query: 167 WRGPQGSLCKSGLCCAH----PVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGL 222
GP G+ G A P PAG + + +AGP G S G
Sbjct: 317 --GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ--------GPRGSEG- 365
Query: 223 FSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD 282
P G P + AA P GA Q +GA A G G A
Sbjct: 366 -------------PQGVRGEPGPPGPAGAAGPAGNPGAD-GQPGAKGANGAPGIAG--AP 409
Query: 283 GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQ 342
G P G G GPPG PGA G++ + G+ G V Q
Sbjct: 410 GFPGAR-------GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK-----GEPGPVGVQ 457
Query: 343 GPPGTHAECAMPGAGGTHSPIAARG--RYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQ 400
GPPG E GA G P G R P PG+ G P G++
Sbjct: 458 GPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Query: 401 GPHG----GGKPSQALAAGPTVSMCGMRPLQGWSRSLLP---KWPPATLWLGDDLFTGSC 453
GP G G+P +A + G + L G S P PP G D G
Sbjct: 518 GPKGSPGEAGRPGEA-------GLPGAKGLTGSPGSPGPDGKTGPPGP--AGQDGRPGPP 568
Query: 454 HFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP----------EAGAQG 495
P + GQ + G G+ G G P EAGAQG
Sbjct: 569 GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 620
Score = 63.5 bits (153), Expect = 7e-10
Identities = 79/296 (26%), Positives = 99/296 (33%), Gaps = 39/296 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ PG RP GL G + L+GS GP G G P G
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG-----PAGQDGRPGPPGPPGA 573
Query: 200 RAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
R QAG P + G A G VP P + P G + + P
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERG-----VPGPPGAVGPAGKDGEA-----GAQGPPG 623
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P AG + QG + G +G P + + G G + GP G +
Sbjct: 624 PAGPAG--ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGF 681
Query: 316 PGASGTRSPIATR-------------RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSP 362
PG G + P + G G +QG PG GA G P
Sbjct: 682 PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 741
Query: 363 IAARGRYRSHPKG-NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPT 417
RG + PKG + SPG G P+G P A G G PS AGPT
Sbjct: 742 KGDRG--DAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSG--PAGPT 793
Score = 57.0 bits (136), Expect = 6e-08
Identities = 89/346 (25%), Positives = 111/346 (32%), Gaps = 42/346 (12%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR- 149
G PG+ +G+T P G+D G G A GF P+ G P +
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQD-GRPGPPGPPGARGQAGVMGFP-----GPKGAAGEPGKA 595
Query: 150 -----PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-PVRPAGHLACGAGIWTRAQA 203
P P G GP G + +GP G +G P G +A
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Query: 204 G-PHKRAVGAAAGAAQSSGLFS-KWVPCQPLSQHPTGPE-------PSSRPHALSTAASP 254
G P ++ V GA SG + P + Q P GP A A +P
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAP 715
Query: 255 RPCWGAG----HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTN 310
G +GA G +G D P+ K G G GPPG
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP- 774
Query: 311 PQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYR 370
PG G P G G A+G PG E PG G P A G+
Sbjct: 775 --AGAPGDKGESGP--------SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQ-- 822
Query: 371 SHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAG 415
P PG + G+ P G P GP G G P A G
Sbjct: 823 --PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG 866
Score = 55.5 bits (132), Expect = 2e-07
Identities = 79/303 (26%), Positives = 103/303 (33%), Gaps = 40/303 (13%)
Query: 135 LAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACG 194
L++ + +K GG P P G GPR L G GPQG P G
Sbjct: 163 LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG--------FQGPPGEPGEPGAS 214
Query: 195 AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASP 254
+ R GP G G K P +P + P GP+ + TA P
Sbjct: 215 GPMGPRGPPGP--------PGKNGDDGEAGK--PGRPGERGPPGPQGAR--GLPGTAGLP 262
Query: 255 RPCWGAGHS----------QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQ 304
G S +G + G G P +R + G G +
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 305 GPPGTNPQCAMPGASGTRSPI----ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTH 360
G G PG +G P A + + G G ++GP G E PG G
Sbjct: 323 GNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAA 382
Query: 361 SPIAARGR-YRSHPKG-NCSPG--SSPGF-GELWPLGQQCPCVAQGPHG-GGKPSQALAA 414
P G + KG N +PG +PGF G P G Q P GP G G+P +
Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSK 442
Query: 415 GPT 417
G T
Sbjct: 443 GDT 445
Score = 55.5 bits (132), Expect = 2e-07
Identities = 107/425 (25%), Positives = 133/425 (31%), Gaps = 62/425 (14%)
Query: 90 AGGPGNWRAEGETEAPLTVGR--DSGLEAGVGVGCGLRTAQPAGFELLAWQHPQK----P 143
AG PG G+ AP G + G GV A P G K
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA 714
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P GL+G G++ GP+G +G P G A
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAG--------PKG-----------ADG 755
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGH 262
P K V G G P P+GP P+ A P P AG
Sbjct: 756 SPGKDGVRGLTGPIGPPG--PAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGF 813
Query: 263 S----QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
+ + GA G G D P G G V G G PGA
Sbjct: 814 AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA 873
Query: 319 SGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCS 378
+G G G V GPPG PG G +G P+G
Sbjct: 874 TGFP-----------GAAGRV---GPPGPSGNAGPPGPPGPAGKEGGKG-----PRGETG 914
Query: 379 PGSSPGF----GELWPLGQQCPCVAQGPHGG-GKPSQALAAGP--TVSMCGMRPLQGWSR 431
P PG G P G++ A GP G G P AG V + G R +G+
Sbjct: 915 PAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 974
Query: 432 SLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEA 491
P P G +G P G L+ +G +G + GS G SP
Sbjct: 975 LPGPSGEPGK--QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP-- 1030
Query: 492 GAQGN 496
GA+G+
Sbjct: 1031 GAKGD 1035
Score = 54.7 bits (130), Expect = 3e-07
Identities = 72/266 (27%), Positives = 88/266 (33%), Gaps = 45/266 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P G GP SG++ GP G K G G R +
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG-----------------GKGPRGE 912
Query: 203 AGPHKR--AVG--AAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCW 258
GP R VG G A G P + P G + P + A R
Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKG--------SPGADGPAGAPGTPGPQGI---AGQRGVV 961
Query: 259 GAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
G Q +G G G P +R G G GPPG + + PGA
Sbjct: 962 GL-PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGA 1020
Query: 319 SGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCS 378
G SP G G GPPG PGA G P+ G +S +G
Sbjct: 1021 EG--SPGRDGSPGAKGDRGETGPAGPPGA------PGAPGAPGPVGPAG--KSGDRGETG 1070
Query: 379 PGSSPGFGELWPLGQQCPCVAQGPHG 404
P G + P+G + P QGP G
Sbjct: 1071 PAGPA--GPVGPVGARGPAGPQGPRG 1094
Score = 53.5 bits (127), Expect = 7e-07
Identities = 64/241 (26%), Positives = 83/241 (34%), Gaps = 28/241 (11%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P P G G + SG+S RGP G + GL A P +G + + G
Sbjct: 971 GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL--AGPPGESGREGAPGAEGSPGRDG 1028
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
+ GA ++ P P + P GP S + A P G
Sbjct: 1029 ----SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVG----P 1080
Query: 265 TWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSP 324
+G QG RG + + R G G QGPPG PG+ G + P
Sbjct: 1081 VGARGPAGPQGPRGDKGETGEQ---GDRGIKGHRGFSGLQGPPGP------PGSPGEQGP 1131
Query: 325 IATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKGNCSPGSSP 383
G G +GPPG+ G G PI G R R+ G P P
Sbjct: 1132 --------SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPP 1183
Query: 384 G 384
G
Sbjct: 1184 G 1184
Score = 50.4 bits (119), Expect = 6e-06
Identities = 80/289 (27%), Positives = 100/289 (34%), Gaps = 58/289 (20%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKS--GLCCAHPVRPAGHLACGAGIWTRA 201
PG P P P G GP L G+ + G KS G+ P+ P+G R
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG---------PRG 188
Query: 202 QAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE----PSSRPHALSTAASPRPC 257
GP A G G P +P + P GP P + A P
Sbjct: 189 LPGP-----PGAPGPQGFQG--PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP--- 238
Query: 258 WGAGHSQTWRQGAGEAQGTRG--GSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
+ +G QG RG G+A G+P + + R G G GP G +
Sbjct: 239 -----GRPGERGPPGPQGARGLPGTA-GLPGMKGH-RGFSGLDGAKGDAGPAGPKGEPGS 291
Query: 316 PGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKG 375
PG +G +P R G+ G A GP G GA G P G
Sbjct: 292 PGENG--APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAG--------------PPG 335
Query: 376 NCSPGSSPGF----GELWPLGQQCPCVAQGPHG----GGKPSQALAAGP 416
P PGF G G Q P ++GP G G P A AAGP
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384
Score = 43.5 bits (101), Expect = 7e-04
Identities = 72/290 (24%), Positives = 87/290 (30%), Gaps = 86/290 (29%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR 149
AG PG EG A + GRD A G PAG PPG P
Sbjct: 1006 AGPPGESGREGAPGAEGSPGRDGSPGAKGDRG----ETGPAG-----------PPGAPGA 1050
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRA 209
P G GP SG GP G A PV P G R AGP
Sbjct: 1051 PGAPGPVGPAGKSGDRGETGPAGP--------AGPVGPVG---------ARGPAGP---- 1089
Query: 210 VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQG 269
Q P G + +T QG
Sbjct: 1090 ------------------------QGPRGDK----------------------GETGEQG 1103
Query: 270 AGEAQGTRGGS---ADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIA 326
+G RG S P + ++ G G +GPPG+ G +G PI
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG 1163
Query: 327 -TRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKG 375
R + G G V GPPG P AG S + + ++H G
Sbjct: 1164 PPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213
Score = 39.3 bits (90), Expect = 0.014
Identities = 37/121 (30%), Positives = 43/121 (35%), Gaps = 15/121 (12%)
Query: 300 TVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGT 359
T +GP G G G R P R G G GPPG PG GG
Sbjct: 107 TTGVEGPKGDT------GPRGPRGPAGPPGRD--GIPGQPGLPGPPGPPGPPGPPGLGGN 158
Query: 360 HSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG----GGKPSQALAAG 415
+P + G G PG G P G P A GP G G+P + A+G
Sbjct: 159 FAPQLSYGYDEKSTGGISVPGP---MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
Query: 416 P 416
P
Sbjct: 216 P 216
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 65.1 bits (157), Expect = 2e-10
Identities = 95/360 (26%), Positives = 119/360 (33%), Gaps = 59/360 (16%)
Query: 142 KPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCA-------HPVRPAGHLACG 194
K P GPQ P G +GPR G +G G + G P P G G
Sbjct: 119 KGPPGPQ--GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLG 176
Query: 195 AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASP 254
+ G ++A GA G Q P GP P + A P
Sbjct: 177 GNFAAQMAGGFDEKAGGAQLGVMQG----------------PMGPMGPRGPPGPAGAPGP 220
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
+ G + G G RG P + GK G +GPPG
Sbjct: 221 QGFQG-NPGEPGEPGVSGPMGPRGPPG---PPGKPGDDGEAGKPGKAGERGPPGPQGARG 276
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG----RYR 370
PG G P R G G G PG E PG G+ P+ RG R R
Sbjct: 277 FPGTPGL--PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 334
Query: 371 SHPKGNCSPGSSPGFGELWPLGQQCPC-VAQGPHGGGKPSQALAAGPTVSMCGMRPLQGW 429
+ P G + G+ G+ P G P A GP G P AGPT + G QG
Sbjct: 335 TGPAG--AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGAR-GPEGAQG- 390
Query: 430 SRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP 489
P+ P T P S G S + T+G G + S G+ G +P
Sbjct: 391 -----PRGEPGT--------------PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 431
Score = 63.5 bits (153), Expect = 7e-10
Identities = 82/285 (28%), Positives = 100/285 (35%), Gaps = 18/285 (6%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ G P RP GL G R L+G GPQG + SG RP GA
Sbjct: 541 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG-APGEDGRPGPPGPQGARGQP 599
Query: 200 RAQAGPHKRAVGAAAGAAQSSGL-FSKWVPCQPLSQHPTG----PEPSSRPHALSTAASP 254
P + G A GL + + P TG P P+ +P
Sbjct: 600 GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP 659
Query: 255 RPCWGAG-HSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
P G G G G +G + G P L R + G G + G G
Sbjct: 660 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV-GPRGERGFPGERGSPGAQGLQGP 718
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY-RS 371
+PG GT P + G G AQGPPG GA G P RG
Sbjct: 719 RGLPGTPGTDGP-----KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEK 773
Query: 372 HPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAG 415
P+G +PG G G P+G P A G G G P A +AG
Sbjct: 774 GPEG--APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAG 816
Score = 56.6 bits (135), Expect = 8e-08
Identities = 83/289 (28%), Positives = 96/289 (33%), Gaps = 50/289 (17%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P P G G + G+S RGP G + GL PAG + G
Sbjct: 993 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGL-----TGPAGEPGREG---SPGADG 1044
Query: 205 PHKR--AVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR-PCWGAG 261
P R A G ++ + + P P S P GP + A P P AG
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104
Query: 262 HSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+G QG RG + G P +R G G QG PG GASG
Sbjct: 1105 -----ARGIQGPQGPRGDKGEAGEPG----ERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1155
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKGNCSP 379
P R GPPG GA G PI G R RS G P
Sbjct: 1156 PAGPSGPR--------------GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1201
Query: 380 GSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAA-GPTVSMCGMRPLQ 427
+PG P GP G G A A GP G PLQ
Sbjct: 1202 PGNPG-----------PPGPPGPPGPGIDMSAFAGLGPREK--GPDPLQ 1237
Score = 55.8 bits (133), Expect = 1e-07
Identities = 77/290 (26%), Positives = 97/290 (33%), Gaps = 58/290 (20%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P GG + G G G P+ P G
Sbjct: 163 PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG-----PMGPMG---------P 208
Query: 200 RAQAGPHKRAVGAAAGAAQSSGL-FSKWVPCQPLSQHPTGPE----PSSRPHALSTAASP 254
R GP AGA G + P +P P GP P +P A P
Sbjct: 209 RGPPGP--------AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP 260
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRG-GSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQC 313
+ +G QG RG G+P + + R G G G PG +
Sbjct: 261 --------GKAGERGPPGPQGARGFPGTPGLPGVKGH-RGYPGLDGAKGEAGAPGVKGES 311
Query: 314 AMPGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
PG +G+ P+ R R + G G A+G G PG G P+ G
Sbjct: 312 GSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG------QPGPAGPPGPVGPAG-- 363
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG----GGKPSQALAAG 415
G PG+ GE P G + P AQGP G G P A A+G
Sbjct: 364 -----GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 408
Score = 54.3 bits (129), Expect = 4e-07
Identities = 84/319 (26%), Positives = 105/319 (32%), Gaps = 59/319 (18%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG +G P T G D A G P G Q P G P
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAG-------PPGA-----QGPPGLQGMPGER 755
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCK-SGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRA 209
G+ GP+ G +GP+G+ K G P+ P G + + GP A
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG---EKGEVGPPGPA 812
Query: 210 VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQG 269
A A A P + TGP P A A +P + ++G
Sbjct: 813 GSAGARGA-------------PGERGETGP-PGPAGFAGPPGADGQPGAKGEQGEAGQKG 858
Query: 270 AGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRR 329
A G +G S P+ G G QGPPG PGA+G
Sbjct: 859 DAGAPGPQGPSGAPGPQ---GPTGVTGPKGARGAQGPPGAT---GFPGAAG--------- 903
Query: 330 RSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY----RSHPKGNCSPGSSPGF 385
+ G G+ GPPG PG G P ARG R+ G P P
Sbjct: 904 --RVGPPGSNGNPGPPGP------PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP-- 953
Query: 386 GELWPLGQQCPCVAQGPHG 404
GE G P A+GP G
Sbjct: 954 GEKGEPGDDGPSGAEGPPG 972
Score = 50.8 bits (120), Expect = 5e-06
Identities = 72/292 (24%), Positives = 93/292 (31%), Gaps = 55/292 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC----------CAHPVRPAG 189
PQ P G P P G+ GP+ G+ +GP G+ G P P G
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGA---QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 921
Query: 190 HLACGAGIWTRAQAGPHKRA----VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRP 245
R +GP RA + AG G +P P+G E P
Sbjct: 922 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG--------EPGDDGPSGAEGPPGP 973
Query: 246 HALS-----------TAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRS 293
L+ P + +QGA A G RG G P LT
Sbjct: 974 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT----- 1028
Query: 294 KCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAM 353
G G +G PG + GA+G + R + G G A GPPG+
Sbjct: 1029 --GPAGEPGREGSPGADGPPGRDGAAGVKGD-----RGETGAVGAPGAPGPPGSPGPAGP 1081
Query: 354 PGAGGTHSPIAARGRYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHG 404
G G A+G P G P + G G P G + G G
Sbjct: 1082 TGKQGDRGEAGAQG-----PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERG 1128
Score = 50.1 bits (118), Expect = 8e-06
Identities = 97/371 (26%), Positives = 119/371 (32%), Gaps = 53/371 (14%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ PPG P +P G G +G GPQG+ G V+ GH
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVK--GHRGYPGLDGA 298
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE--PSSRPHALSTAASPRPC 257
+ +AG A G SG P + S P GP P R P
Sbjct: 299 KGEAG--------APGVKGESG-----SPGENGSPGPMGPRGLPGERGR-----TGPAGA 340
Query: 258 WGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
GA + AG G P G+ G +GP G PG
Sbjct: 341 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAP----GAKGEAGPTGARGPEGAQGPRGEPG 396
Query: 318 ASGTRSPI-ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G+ P A+ G G + G PG PG G P A G PKG
Sbjct: 397 TPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL--GPKGQ 454
Query: 377 CSPGSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLP 435
GF GE P G+ P GP G P AG G R +G + P
Sbjct: 455 TGEPGIAGFKGEQGPKGEPGPA---GPQGAPGP-----AGEE----GKRGARGEPGGVGP 502
Query: 436 KWPPATL-------WLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRS---GGSWGE 485
PP + G D G P G L+ NG G+ G+ G
Sbjct: 503 IGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL 562
Query: 486 TQSP-EAGAQG 495
T P +AG QG
Sbjct: 563 TGRPGDAGPQG 573
Score = 48.5 bits (114), Expect = 2e-05
Identities = 69/264 (26%), Positives = 90/264 (34%), Gaps = 34/264 (12%)
Query: 146 GPQRPS-PGGLRGPRSLSGSSPWRG---PQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
GP P+ P G RG + G S ++G P G + G V G + R
Sbjct: 642 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--PGEAGAPGLVGPRG 699
Query: 202 QAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGA 260
+ G P +R A G GL P + GP+ +S P A P G
Sbjct: 700 ERGFPGERGSPGAQGLQGPRGL--------PGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 261 GHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+ G +G RG + PE + G G + GP G N G G
Sbjct: 752 P-GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN------GEKG 804
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
P G G+ A+G PG E PG G P A G+ P G
Sbjct: 805 EVGPP--------GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ----PGAKGEQG 852
Query: 381 SSPGFGELWPLGQQCPCVAQGPHG 404
+ G+ G Q P A GP G
Sbjct: 853 EAGQKGDAGAPGPQGPSGAPGPQG 876
Score = 47.8 bits (112), Expect = 4e-05
Identities = 90/360 (25%), Positives = 111/360 (30%), Gaps = 47/360 (13%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCA----HPVRPAGHLAC 193
Q P+ PG P P P G G G G +GS G+ A P P G
Sbjct: 389 QGPRGEPGTPGSPGPAGASGNPGTDGIP---GAKGSAGAPGIAGAPGFPGPRGPPGPQGA 445
Query: 194 GAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-PEPSSRPHALSTAA 252
+ + Q G + + G G +P P G P P+
Sbjct: 446 TGPLGPKGQTG--EPGIAGFKGEQGPKG--------EPGPAGPQGAPGPAGEEGKRGARG 495
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRG-GSADGI--PELTCYQRSKCGKCGTVPTQGPPGT 309
P G G A G RG DG+ P+ +R G G G PG
Sbjct: 496 EP-----GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Query: 310 NPQCAMPGASG-TRSPIATRRRSKCGKCGTVTAQ---GPPGTHAECAMPGAGGTHSPIAA 365
+ +PGA G T P + K G G GPPG PG G P A
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 610
Query: 366 RGRYRSHPKGNCSPGSSPGFGELWPL-GQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMR 424
G G PG L L G+ A GP G P+ G +
Sbjct: 611 NGE-----PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQ 665
Query: 425 PLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWG 484
L G P PP G+ G P G L G G+R S G+ G
Sbjct: 666 GLPG------PPGPP-----GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQG 714
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRR----RSKCGKCGTVTAQGPPGTHAECAMPGA 356
V +GPPG G G R + R + G+ GT GPPG PG
Sbjct: 116 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 175
Query: 357 GGTHSPIAARGRYRSHPKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHG----GGKPSQA 411
GG + A G G G G G + P G P A GP G G+P +
Sbjct: 176 GGNFAAQMAGG--FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 233
Query: 412 LAAGP 416
+GP
Sbjct: 234 GVSGP 238
Score = 32.7 bits (73), Expect = 1.3
Identities = 54/233 (23%), Positives = 67/233 (28%), Gaps = 73/233 (31%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G +G R +G+ GP G G+ P P G + +
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI--QGPQGPRG---------DKGE 1120
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG 261
AG P +R + G GL P P PS
Sbjct: 1121 AGEPGERGLKGHRGFTGLQGL-------------PGPPGPS------------------- 1148
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
G +G S G G +GPPG GA+G
Sbjct: 1149 -------------GDQGAS---------------GPAGPSGPRGPPGPVGPSGKDGANGI 1180
Query: 322 RSPIA-TRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHP 373
PI R + G+ G G PG PG G S A G P
Sbjct: 1181 PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 65.1 bits (157), Expect = 2e-10
Identities = 95/360 (26%), Positives = 119/360 (33%), Gaps = 59/360 (16%)
Query: 142 KPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCA-------HPVRPAGHLACG 194
K P GPQ P G +GPR G +G G + G P P G G
Sbjct: 50 KGPPGPQ--GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLG 107
Query: 195 AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASP 254
+ G ++A GA G Q P GP P + A P
Sbjct: 108 GNFAAQMAGGFDEKAGGAQLGVMQG----------------PMGPMGPRGPPGPAGAPGP 151
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
+ G + G G RG P + GK G +GPPG
Sbjct: 152 QGFQG-NPGEPGEPGVSGPMGPRGPPG---PPGKPGDDGEAGKPGKAGERGPPGPQGARG 207
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG----RYR 370
PG G P R G G G PG E PG G+ P+ RG R R
Sbjct: 208 FPGTPGL--PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 265
Query: 371 SHPKGNCSPGSSPGFGELWPLGQQCPC-VAQGPHGGGKPSQALAAGPTVSMCGMRPLQGW 429
+ P G + G+ G+ P G P A GP G P AGPT + G QG
Sbjct: 266 TGPAG--AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGAR-GPEGAQG- 321
Query: 430 SRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP 489
P+ P T P S G S + T+G G + S G+ G +P
Sbjct: 322 -----PRGEPGT--------------PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP 362
Score = 63.5 bits (153), Expect = 7e-10
Identities = 82/285 (28%), Positives = 100/285 (35%), Gaps = 18/285 (6%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ G P RP GL G R L+G GPQG + SG RP GA
Sbjct: 472 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG-APGEDGRPGPPGPQGARGQP 530
Query: 200 RAQAGPHKRAVGAAAGAAQSSGL-FSKWVPCQPLSQHPTG----PEPSSRPHALSTAASP 254
P + G A GL + + P TG P P+ +P
Sbjct: 531 GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP 590
Query: 255 RPCWGAG-HSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
P G G G G +G + G P L R + G G + G G
Sbjct: 591 GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV-GPRGERGFPGERGSPGAQGLQGP 649
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY-RS 371
+PG GT P + G G AQGPPG GA G P RG
Sbjct: 650 RGLPGTPGTDGP-----KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEK 704
Query: 372 HPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAG 415
P+G +PG G G P+G P A G G G P A +AG
Sbjct: 705 GPEG--APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAG 747
Score = 56.6 bits (135), Expect = 8e-08
Identities = 83/289 (28%), Positives = 96/289 (33%), Gaps = 50/289 (17%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P P G G + G+S RGP G + GL PAG + G
Sbjct: 924 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGL-----TGPAGEPGREG---SPGADG 975
Query: 205 PHKR--AVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR-PCWGAG 261
P R A G ++ + + P P S P GP + A P P AG
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035
Query: 262 HSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+G QG RG + G P +R G G QG PG GASG
Sbjct: 1036 -----ARGIQGPQGPRGDKGEAGEPG----ERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1086
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKGNCSP 379
P R GPPG GA G PI G R RS G P
Sbjct: 1087 PAGPSGPR--------------GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1132
Query: 380 GSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAA-GPTVSMCGMRPLQ 427
+PG P GP G G A A GP G PLQ
Sbjct: 1133 PGNPG-----------PPGPPGPPGPGIDMSAFAGLGPREK--GPDPLQ 1168
Score = 55.8 bits (133), Expect = 1e-07
Identities = 77/290 (26%), Positives = 97/290 (33%), Gaps = 58/290 (20%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P GG + G G G P+ P G
Sbjct: 94 PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG-----PMGPMG---------P 139
Query: 200 RAQAGPHKRAVGAAAGAAQSSGL-FSKWVPCQPLSQHPTGPE----PSSRPHALSTAASP 254
R GP AGA G + P +P P GP P +P A P
Sbjct: 140 RGPPGP--------AGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP 191
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRG-GSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQC 313
+ +G QG RG G+P + + R G G G PG +
Sbjct: 192 --------GKAGERGPPGPQGARGFPGTPGLPGVKGH-RGYPGLDGAKGEAGAPGVKGES 242
Query: 314 AMPGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
PG +G+ P+ R R + G G A+G G PG G P+ G
Sbjct: 243 GSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG------QPGPAGPPGPVGPAG-- 294
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG----GGKPSQALAAG 415
G PG+ GE P G + P AQGP G G P A A+G
Sbjct: 295 -----GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 339
Score = 54.3 bits (129), Expect = 4e-07
Identities = 84/319 (26%), Positives = 105/319 (32%), Gaps = 59/319 (18%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG +G P T G D A G P G Q P G P
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAG-------PPGA-----QGPPGLQGMPGER 686
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCK-SGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRA 209
G+ GP+ G +GP+G+ K G P+ P G + + GP A
Sbjct: 687 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG---EKGEVGPPGPA 743
Query: 210 VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQG 269
A A A P + TGP P A A +P + ++G
Sbjct: 744 GSAGARGA-------------PGERGETGP-PGPAGFAGPPGADGQPGAKGEQGEAGQKG 789
Query: 270 AGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRR 329
A G +G S P+ G G QGPPG PGA+G
Sbjct: 790 DAGAPGPQGPSGAPGPQ---GPTGVTGPKGARGAQGPPGAT---GFPGAAG--------- 834
Query: 330 RSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY----RSHPKGNCSPGSSPGF 385
+ G G+ GPPG PG G P ARG R+ G P P
Sbjct: 835 --RVGPPGSNGNPGPPGP------PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP-- 884
Query: 386 GELWPLGQQCPCVAQGPHG 404
GE G P A+GP G
Sbjct: 885 GEKGEPGDDGPSGAEGPPG 903
Score = 50.8 bits (120), Expect = 5e-06
Identities = 72/292 (24%), Positives = 93/292 (31%), Gaps = 55/292 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC----------CAHPVRPAG 189
PQ P G P P G+ GP+ G+ +GP G+ G P P G
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGA---QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 852
Query: 190 HLACGAGIWTRAQAGPHKRA----VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRP 245
R +GP RA + AG G +P P+G E P
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG--------EPGDDGPSGAEGPPGP 904
Query: 246 HALS-----------TAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRS 293
L+ P + +QGA A G RG G P LT
Sbjct: 905 QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT----- 959
Query: 294 KCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAM 353
G G +G PG + GA+G + R + G G A GPPG+
Sbjct: 960 --GPAGEPGREGSPGADGPPGRDGAAGVKGD-----RGETGAVGAPGAPGPPGSPGPAGP 1012
Query: 354 PGAGGTHSPIAARGRYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHG 404
G G A+G P G P + G G P G + G G
Sbjct: 1013 TGKQGDRGEAGAQG-----PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERG 1059
Score = 50.1 bits (118), Expect = 8e-06
Identities = 97/371 (26%), Positives = 119/371 (32%), Gaps = 53/371 (14%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ PPG P +P G G +G GPQG+ G V+ GH
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVK--GHRGYPGLDGA 229
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE--PSSRPHALSTAASPRPC 257
+ +AG A G SG P + S P GP P R P
Sbjct: 230 KGEAG--------APGVKGESG-----SPGENGSPGPMGPRGLPGERGR-----TGPAGA 271
Query: 258 WGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
GA + AG G P G+ G +GP G PG
Sbjct: 272 AGARGNDGQPGPAGPPGPVGPAGGPGFPGAP----GAKGEAGPTGARGPEGAQGPRGEPG 327
Query: 318 ASGTRSPI-ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G+ P A+ G G + G PG PG G P A G PKG
Sbjct: 328 TPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL--GPKGQ 385
Query: 377 CSPGSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLP 435
GF GE P G+ P GP G P AG G R +G + P
Sbjct: 386 TGEPGIAGFKGEQGPKGEPGPA---GPQGAPGP-----AGEE----GKRGARGEPGGVGP 433
Query: 436 KWPPATL-------WLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRS---GGSWGE 485
PP + G D G P G L+ NG G+ G+ G
Sbjct: 434 IGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL 493
Query: 486 TQSP-EAGAQG 495
T P +AG QG
Sbjct: 494 TGRPGDAGPQG 504
Score = 48.5 bits (114), Expect = 2e-05
Identities = 69/264 (26%), Positives = 90/264 (34%), Gaps = 34/264 (12%)
Query: 146 GPQRPS-PGGLRGPRSLSGSSPWRG---PQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
GP P+ P G RG + G S ++G P G + G V G + R
Sbjct: 573 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--PGEAGAPGLVGPRG 630
Query: 202 QAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGA 260
+ G P +R A G GL P + GP+ +S P A P G
Sbjct: 631 ERGFPGERGSPGAQGLQGPRGL--------PGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 261 GHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+ G +G RG + PE + G G + GP G N G G
Sbjct: 683 P-GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN------GEKG 735
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
P G G+ A+G PG E PG G P A G+ P G
Sbjct: 736 EVGPP--------GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ----PGAKGEQG 783
Query: 381 SSPGFGELWPLGQQCPCVAQGPHG 404
+ G+ G Q P A GP G
Sbjct: 784 EAGQKGDAGAPGPQGPSGAPGPQG 807
Score = 47.8 bits (112), Expect = 4e-05
Identities = 90/360 (25%), Positives = 111/360 (30%), Gaps = 47/360 (13%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCA----HPVRPAGHLAC 193
Q P+ PG P P P G G G G +GS G+ A P P G
Sbjct: 320 QGPRGEPGTPGSPGPAGASGNPGTDGIP---GAKGSAGAPGIAGAPGFPGPRGPPGPQGA 376
Query: 194 GAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-PEPSSRPHALSTAA 252
+ + Q G + + G G +P P G P P+
Sbjct: 377 TGPLGPKGQTG--EPGIAGFKGEQGPKG--------EPGPAGPQGAPGPAGEEGKRGARG 426
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRG-GSADGI--PELTCYQRSKCGKCGTVPTQGPPGT 309
P G G A G RG DG+ P+ +R G G G PG
Sbjct: 427 EP-----GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Query: 310 NPQCAMPGASG-TRSPIATRRRSKCGKCGTVTAQ---GPPGTHAECAMPGAGGTHSPIAA 365
+ +PGA G T P + K G G GPPG PG G P A
Sbjct: 482 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 541
Query: 366 RGRYRSHPKGNCSPGSSPGFGELWPL-GQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMR 424
G G PG L L G+ A GP G P+ G +
Sbjct: 542 NGE-----PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQ 596
Query: 425 PLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWG 484
L G P PP G+ G P G L G G+R S G+ G
Sbjct: 597 GLPG------PPGPP-----GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQG 645
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 301 VPTQGPPGTNPQCAMPGASGTRSPIATRR----RSKCGKCGTVTAQGPPGTHAECAMPGA 356
V +GPPG G G R + R + G+ GT GPPG PG
Sbjct: 47 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 106
Query: 357 GGTHSPIAARGRYRSHPKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHG----GGKPSQA 411
GG + A G G G G G + P G P A GP G G+P +
Sbjct: 107 GGNFAAQMAGG--FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164
Query: 412 LAAGP 416
+GP
Sbjct: 165 GVSGP 169
Score = 32.7 bits (73), Expect = 1.3
Identities = 54/233 (23%), Positives = 67/233 (28%), Gaps = 73/233 (31%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G +G R +G+ GP G G+ P P G + +
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI--QGPQGPRG---------DKGE 1051
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG 261
AG P +R + G GL P P PS
Sbjct: 1052 AGEPGERGLKGHRGFTGLQGL-------------PGPPGPS------------------- 1079
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
G +G S G G +GPPG GA+G
Sbjct: 1080 -------------GDQGAS---------------GPAGPSGPRGPPGPVGPSGKDGANGI 1111
Query: 322 RSPIA-TRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHP 373
PI R + G+ G G PG PG G S A G P
Sbjct: 1112 PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 58.9 bits (141), Expect = 2e-08
Identities = 88/329 (26%), Positives = 111/329 (33%), Gaps = 50/329 (15%)
Query: 117 GVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPR------SLSGSSPWRGP 170
GVG+G G P G P+ PPG P P G +GP +G + RGP
Sbjct: 85 GVGLGPG-----PMGL-----MGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGP 134
Query: 171 QGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQ 230
G K+G HP +P G A+ P + G +GL
Sbjct: 135 AGPPGKAGE-DGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGL-------D 186
Query: 231 PLSQHPTGPEPSSRPHALSTAASPRPCWGAG-HSQTWRQGAGEAQGTRG----------- 278
L P P P A +P G + R GA G RG
Sbjct: 187 GLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPA 246
Query: 279 ---GSA--DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKC 333
GSA G P + + G G GP G + +PG SG P +
Sbjct: 247 GPIGSAGPPGFPGAP-GPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGAN-- 303
Query: 334 GKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRS-----HPKGNCSPGSSPGFGEL 388
G G A G PG +PG G P+ A G + P S G S GE
Sbjct: 304 GLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEP 363
Query: 389 WPLGQQCPCVAQGPHGGGKPS-QALAAGP 416
G Q P G G P+ +A +AGP
Sbjct: 364 GSAGPQGPPGPSGEEGKRGPNGEAGSAGP 392
Score = 52.4 bits (124), Expect = 2e-06
Identities = 77/284 (27%), Positives = 94/284 (33%), Gaps = 52/284 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P GL G + + +G G G
Sbjct: 58 PTGPPGPPGPPGPPGLGG--NFAAQYDGKG-----------------------VGLGPGP 92
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
GP R AAGA G Q + P P + A A P
Sbjct: 93 MGLMGP--RGPPGAAGAPGPQGF-------QGPAGEPGEPGQTGPAGARGPAGPPGKAGE 143
Query: 260 AGH----SQTWRQGAGEAQGTRGGSADGIPELTCYQ--RSKCGKCGTVPTQGPPGTNPQC 313
GH + +G QG RG G P L ++ R G G G PG +
Sbjct: 144 DGHPGKPGRPGERGVVGPQGARG--FPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201
Query: 314 AMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHP 373
PG +GT P T R G+ G V A GP G G G PI + G P
Sbjct: 202 GAPGENGT--PGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAG-----P 254
Query: 374 KGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
G PG+ GE+ +G P GP G G P + GP
Sbjct: 255 PG--FPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGP 296
Score = 51.6 bits (122), Expect = 3e-06
Identities = 93/354 (26%), Positives = 112/354 (31%), Gaps = 53/354 (14%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQ-PAGFELLAWQHPQKPPGGPQR 149
G PG + G P GR AGV G R A PAG + P G R
Sbjct: 394 GPPGLRGSPGSRGLPGADGR-----AGVMGPPGSRGASGPAGV--------RGPNGDAGR 440
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH----PVRPAGHLACGAGIWTRAQAG- 204
P GL GPR L GS GP G GL P+ PAG I G
Sbjct: 441 PGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGP 500
Query: 205 ---PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-------PSSRPHALSTAASP 254
P K AG A + G + +Q P GP+ P P
Sbjct: 501 TGDPGKNGDKGHAGLAGARG--APGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLP 558
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
P AG + + G G G P +R G+ G GP G+
Sbjct: 559 GPSGPAG--EVGKPGERGLHGEFGLPGPAGPR---GERGPPGESGAAGPTGPIGSRGPSG 613
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGP---PGTHAECAMPGAGGTHSPIAARGRY-- 369
PG G + G GT GP PG +PG G RG
Sbjct: 614 PPGPDGNKG-----EPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGN 668
Query: 370 ------RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
R P +PG + G+ G P GP G G+ + AGP
Sbjct: 669 PGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722
Score = 51.2 bits (121), Expect = 3e-06
Identities = 94/346 (27%), Positives = 118/346 (34%), Gaps = 34/346 (9%)
Query: 85 ITGAW--AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQK 142
+TGA AG PG A G P + G G + PAG + + +
Sbjct: 305 LTGAKGAAGLPGVAGAPG-LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEP 363
Query: 143 PPGGPQRPSPG-----GLRGPRSLSGSSPWRGP---QGSLCKSGLCCAHPVRPAGHLACG 194
GPQ P PG G RGP +GS+ GP +GS GL A G
Sbjct: 364 GSAGPQGP-PGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD-----GRAGVM 417
Query: 195 AGIWTRAQAGPHK-RAVGAAAGAAQSSGLFS-KWVPCQPLSQHPTGPE-PSSRPHALSTA 251
+R +GP R AG GL + +P P + P G E P P
Sbjct: 418 GPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLP---GID 474
Query: 252 ASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNP 311
P P AG G G +G + D + G G GP G N
Sbjct: 475 GRPGPIGPAG--ARGEPGNIGFPGPKGPTGDPGKN---GDKGHAGLAGARGAPGPDGNNG 529
Query: 312 QCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRS 371
PG G + + G G GP G E PG G H G +
Sbjct: 530 AQGPPGPQGVQG--GKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGP--A 585
Query: 372 HPKGNCSP-GSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAG 415
P+G P G S G P+G + P GP G G+P A G
Sbjct: 586 GPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVG 631
Score = 46.2 bits (108), Expect = 1e-04
Identities = 90/349 (25%), Positives = 109/349 (31%), Gaps = 42/349 (12%)
Query: 91 GGPGNWRAEGETEAPLTVGRD--SGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQ 148
G GN +G AP VG +G G A PAG + + P GP
Sbjct: 664 GEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPN 723
Query: 149 ----------RPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIW 198
+P G RG + G + GP G + +G PAG
Sbjct: 724 GFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAG--------PAGPNGPPGPAG 775
Query: 199 TRAQAGPHKRA--VGAA--AGAAQSSGLFSKWVPCQPLSQHP-TGPEPSSRP--HALSTA 251
+R GP GAA G SG+ P P + GP P
Sbjct: 776 SRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVG 835
Query: 252 ASPRPCWGAGHSQTWRQGAGEAQGTRGG----SADGIPELTCYQRSKCGKCGTVPTQGPP 307
A P + + G GT G A GI L R + G G G P
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLP-GSRGERGLPGVAGAVGEP 894
Query: 308 GTNPQCAMPGASG----TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGA---GGTH 360
G PGA G SP + G+ G GPPG + G G
Sbjct: 895 GPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNI 954
Query: 361 SPIAARGRYRSHPKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHGGGKP 408
P+ A G P G P G GE P G P A GP G P
Sbjct: 955 GPVGAAG--APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGP 1001
Score = 44.7 bits (104), Expect = 3e-04
Identities = 89/335 (26%), Positives = 101/335 (30%), Gaps = 59/335 (17%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH----PVRPAGHLACGAGIW 198
PPG P G GP SG S GP G K GL PV G +
Sbjct: 782 PPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPG 841
Query: 199 TRAQAGPHKRA-VGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPC 257
+ GP A G GL + P P P P
Sbjct: 842 FAGEKGPSGEAGTAGPPGTPGPQGLLG----APGILGLPGSRGERGLPGVAGAVGEPGPL 897
Query: 258 WGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
AG +G A G+ G +G P + G+ G GPPG + Q PG
Sbjct: 898 GIAG--PPGARGPPGAVGSPG--VNGAP-------GEAGRDGNPGNDGPPGRDGQ---PG 943
Query: 318 ASGTRS-PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKG 375
G R P G G GP G H G G P A G R S P+G
Sbjct: 944 HKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQG 1003
Query: 376 NCSPGSSPGFGELWPLG----------QQCPCVAQGPHGG-GKPSQALAAGP-------- 416
P GE P G Q P +A G HG G P AGP
Sbjct: 1004 IRGDKGEP--GEKGPRGLPGLKGHNGLQGLPGIA-GHHGDQGAPGSVGPAGPRGPAGPSG 1060
Query: 417 ------------TVSMCGMRPLQGWSRSLLPKWPP 439
TV G+R QG P PP
Sbjct: 1061 PAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPP 1095
Score = 34.3 bits (77), Expect = 0.44
Identities = 76/294 (25%), Positives = 94/294 (31%), Gaps = 59/294 (20%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDS--------GLEAGVGVGCGLRTAQPAGFELLAWQHPQ 141
AG PG +G AP +G G+ VG L A P G +
Sbjct: 855 AGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPG--------AR 906
Query: 142 KPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
PPG P G G G+ GP G + G GH +
Sbjct: 907 GPPGAVGSPGVNGAPGEAGRDGNPGNDGPPG---RDG--------QPGH---------KG 946
Query: 202 QAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQH----PTGPEPSSRPHALSTAASPRP 256
+ G P AAGA G P P +H TGP S P + A PR
Sbjct: 947 ERGYPGNIGPVGAAGAPGPHG------PVGPAGKHGNRGETGP---SGPVGPAGAVGPR- 996
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ--RSKCGKCGTVPTQGPPGTNPQCA 314
G Q R GE G +G G+P L + + G G QG PG+
Sbjct: 997 --GPSGPQGIRGDKGEP-GEKGPR--GLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAG 1051
Query: 315 MPGASGTRSPIATRRRS-KCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG 367
G +G P R+ G G +GP G PG G P G
Sbjct: 1052 PRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSG 1105
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 58.9 bits (141), Expect = 2e-08
Identities = 80/303 (26%), Positives = 105/303 (34%), Gaps = 31/303 (10%)
Query: 143 PPGGPQRPSPGGLRGPRSLSG-----SSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
PPG P P G +GP L G P RG G GL P P+G +
Sbjct: 2187 PPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGL--PGPPGPSGLVGPQGSP 2244
Query: 198 WTRAQAGPHKR--AVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
Q G + A G + + S VP P P GP+ P A
Sbjct: 2245 GLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG 2304
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
G AG+ G G D G+P R + G+ G G PG + Q
Sbjct: 2305 LPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPG----PRGEKGEAGRAGEPGDPGEDGQKG 2360
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPK 374
PG G + G G+ GPPG + +PG G + G ++ P+
Sbjct: 2361 APGPKGFKGDPGV------GVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPG--QTGPR 2412
Query: 375 GNC-SPGSSPGFGELWPLGQQ---CPCVAQGPHGG-GKPSQALAAG----PTVSMCGMRP 425
G PG S G P G++ P GP G G P + G P V + G R
Sbjct: 2413 GEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRG 2472
Query: 426 LQG 428
+G
Sbjct: 2473 ERG 2475
Score = 47.8 bits (112), Expect = 4e-05
Identities = 72/290 (24%), Positives = 90/290 (31%), Gaps = 22/290 (7%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G GP+ GS+ +G +G G P R GA +
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGR-PGSPGRAGNPGTPGAPGLKGSP 1328
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-------PEPSSRPHALSTAASPR 255
P R G G P Q + G P PS P P
Sbjct: 1329 GLPGPRGDPGERGPRGPKG--EPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPG 1386
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P G T +G +G RG G + + G G+ QGP G
Sbjct: 1387 PRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGP------ 1440
Query: 316 PGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPK 374
PG G + G+ G+ QGP G G G P+ G + P
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPP 1500
Query: 375 GNCSPGSSPGF----GELWPLGQQCPCVAQGPHG-GGKPSQALAAGPTVS 419
G PG G P G P QG G G+P GP V+
Sbjct: 1501 GPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVA 1550
Score = 45.1 bits (105), Expect = 2e-04
Identities = 99/414 (23%), Positives = 136/414 (32%), Gaps = 34/414 (8%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG+ +G+ P G L V G G R G + P+ P G P P
Sbjct: 1685 GSPGSSGPKGDRGEPGPPGPPGRL---VDTGPGAREKGEPGDR--GQEGPRGPKGDPGLP 1739
Query: 151 -SPG-----GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
+PG G RGP G RGP G G P G +G
Sbjct: 1740 GAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRG-----PPGLDGRSGLDGKPGAAGPSG 1794
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGHS 263
P+ AAG A G +P Q GP P P +P +
Sbjct: 1795 PN-----GAAGKAGDPG--RDGLPGLRGEQGLPGPSGPPGLPG--KPGEDGKPGLNGKNG 1845
Query: 264 QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRS 323
+ G +G +G S E + + G G + QGPPG PG
Sbjct: 1846 EPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGV 1905
Query: 324 PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSP 383
P T + G+ G+ QG PG PG+ + ++
Sbjct: 1906 PGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDE 1965
Query: 384 GFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATL 442
G P+ ++ +GP G G+ GP + G R L+G P+ PP L
Sbjct: 1966 SSGSFLPVPER----RRGPKGDSGEQGPPGKEGP-IGFPGERGLKGDRGDPGPQGPPG-L 2019
Query: 443 WLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGET-QSPEAGAQG 495
LG+ G G+ + GG G+ G GE + E G QG
Sbjct: 2020 ALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQG 2073
Score = 42.7 bits (99), Expect = 0.001
Identities = 56/197 (28%), Positives = 69/197 (35%), Gaps = 27/197 (13%)
Query: 239 PEPSSRPH-ALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGK 297
P P P AL P P AG + + G G GG + +R + G+
Sbjct: 2011 PGPQGPPGLALGERGPPGPSGLAG--EPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGE 2068
Query: 298 CGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAG 357
G GPPG +PG G P + G QGPPG PG+
Sbjct: 2069 RGEQGRDGPPG------LPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSN 2122
Query: 358 GTHSPIAARG-------RYRSHPKG-NCSPGSSPGFGELWPLGQ---QCPCVAQGPHGG- 405
G P RG R P+G + +PG G P G+ Q P GP GG
Sbjct: 2123 GDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGH 2182
Query: 406 ------GKPSQALAAGP 416
G P A AGP
Sbjct: 2183 GDPGPPGAPGLAGPAGP 2199
Score = 42.4 bits (98), Expect = 0.002
Identities = 67/254 (26%), Positives = 79/254 (31%), Gaps = 43/254 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-------PVRPAGHLACGA 195
PPG P P P G GP+ +S P G G GL A P G
Sbjct: 2077 PPGLPGTPGPPGPPGPK-VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPG 2135
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
R + GP G + GL P + GPE +P P
Sbjct: 2136 IKGDRGEPGPR--------GQDGNPGL--------PGERGMAGPE--GKPGLQGPRGPPG 2177
Query: 256 PCWGAGHSQTWRQGAGEAQGTRG----GSADGIP-ELTCYQRSKCGKCGTVPTQGPPGTN 310
P GH GA G G G P E R G G V GPPG +
Sbjct: 2178 PV--GGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPS 2235
Query: 311 PQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYR 370
G+ G P K G G A G G +PG+ G P+
Sbjct: 2236 GLVGPQGSPGL--PGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVG------ 2287
Query: 371 SHPKGNCSPGSSPG 384
PKG P +PG
Sbjct: 2288 --PKGEPGPTGAPG 2299
Score = 41.6 bits (96), Expect = 0.003
Identities = 71/269 (26%), Positives = 90/269 (33%), Gaps = 61/269 (22%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P +P G +GPR G+ GP+G G P+ AG + +
Sbjct: 1455 PGLPGQPGSPGEQGPRGPPGAI---GPKGDRGFPG-----PLGEAGE---------KGER 1497
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHS 263
GP G A S GL P + RP A P P
Sbjct: 1498 GP--------PGPAGSRGL----------------PGVAGRPGAKGPEGPPGP------- 1526
Query: 264 QTWRQGAGEAQGTRGGSADGIPELTCYQRSK-----CGKCGTVPTQGPPGTNPQCAMPGA 318
T RQG G G A P + + K G G QG G P +PG
Sbjct: 1527 -TGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGP-PGLVLPGD 1584
Query: 319 SGTRSPIATRRR-SKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR-YRSHPKGN 376
G + R G+ G GPPG + PG G P+ RGR KG+
Sbjct: 1585 PGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGD---PGRPGPPGPVGPRGRDGEVGEKGD 1641
Query: 377 CSPGSSPGF-GELWPLGQQCPCVAQGPHG 404
P PG G+ G + +GP G
Sbjct: 1642 EGPPGDPGLPGKAGERGLRGAPGVRGPVG 1670
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/300 (26%), Positives = 92/300 (30%), Gaps = 44/300 (14%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL----CCAHPVRPAGHLACGA 195
P PG P + GLRG + G +G QG + G + P G
Sbjct: 1644 PPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPG 1703
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
GP R G Q K P P + G E P P
Sbjct: 1704 PPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGP--------PG 1755
Query: 256 PCWGAGHSQTWRQGAGEAQGTRG-------GSADGIPELT--CYQRSKCGKCGTVPTQGP 306
P G R AGE +G RG DG P GK G G
Sbjct: 1756 PQGDPG----VRGPAGE-KGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGL 1810
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG + +PG SG P + + GK G G PG E G G
Sbjct: 1811 PGLRGEQGLPGPSG--PPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGRE 1868
Query: 367 GRYRSHPKGN------CSPGSSPGF-GELWPLGQQCPCV--AQGPHG-----GGKPSQAL 412
G R PKG P PG G + P GQ P V GP G G K Q L
Sbjct: 1869 G--RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGL 1926
Score = 38.5 bits (88), Expect = 0.023
Identities = 98/407 (24%), Positives = 126/407 (30%), Gaps = 73/407 (17%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG G P G+ G G G G R P P PPG
Sbjct: 1335 GDPGERGPRGPKGEPGAPGQVIG---GEGPGLPGRKGDPG---------PSGPPGPRGPL 1382
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRAV 210
G RGP L G++ +G +G + G P P G G
Sbjct: 1383 GDPGPRGPPGLPGTA-MKGDKGDRGERG-----PPGP------GEG-------------- 1416
Query: 211 GAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASP-RPCWGAGHSQTWRQG 269
G A G GL P P Q P GP S +P P + +G
Sbjct: 1417 GIAPGEPGLPGL-----PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRG 1471
Query: 270 AGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIA-TR 328
A G +G P ++ + G G ++G PG PGA G P T
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGV---AGRPGAKGPEGPPGPTG 1528
Query: 329 RRSKCGKCGT--------VTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
R+ + G+ G GP G + G G RG G+ P
Sbjct: 1529 RQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPK 1588
Query: 381 SSPG-FGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWP 438
PG G + G+ P GP G G P + GP G R G + P
Sbjct: 1589 GDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPV----GPRGRDGEVGEKGDEGP 1644
Query: 439 PATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGE 485
P G P G+R L + G G++ G GE
Sbjct: 1645 P-----------GDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGE 1680
Score = 35.4 bits (80), Expect = 0.20
Identities = 63/281 (22%), Positives = 85/281 (30%), Gaps = 64/281 (22%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P P G+ G R G + GP+G + G+ G + +A
Sbjct: 2595 PGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGV--------KGACGLDGEKGDKGEA 2646
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHS 263
GP R G A G + P P S P
Sbjct: 2647 GPPGR-----PGLAGHKGEMGE----------PGVPGQSGAP------------------ 2673
Query: 264 QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRS 323
++G +G RG P+ ++ + G G GP G + PG G+
Sbjct: 2674 --GKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVG 2731
Query: 324 PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSP 383
P R G G +GPPG A PG G +GR G P
Sbjct: 2732 P-----RGPEGLQGQKGERGPPGERVVGA-PGVPGAPGERGEQGR-----PGPAGPRGEK 2780
Query: 384 GFGEL----------WPLGQQCPCVAQGPHGGGKPSQALAA 414
G L + Q C C Q G +P + AA
Sbjct: 2781 GEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPSYAA 2821
Score = 33.5 bits (75), Expect = 0.75
Identities = 39/148 (26%), Positives = 52/148 (35%), Gaps = 20/148 (13%)
Query: 274 QGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKC 333
+G RG D P R G G ++G PG +PG G P
Sbjct: 2541 RGPRGLDGDKGP------RGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGP--------Q 2586
Query: 334 GKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG----RYRSHPKGNCS-PGSSPGFGEL 388
G+ G G PG+ + +PG G + G + KG C G GE
Sbjct: 2587 GQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEA 2646
Query: 389 WPLGQQCPCVAQGPHG-GGKPSQALAAG 415
P G+ +G G G P Q+ A G
Sbjct: 2647 GPPGRPGLAGHKGEMGEPGVPGQSGAPG 2674
Score = 33.1 bits (74), Expect = 0.98
Identities = 37/144 (25%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 291 QRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI-------------ATRRRSKCGKCG 337
Q+ + G+ G GPPG GA G + P A R G+ G
Sbjct: 1255 QKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAG 1314
Query: 338 TVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKGNCSPGSSPGF-------GELW 389
G PG +PG G RG + G G PG G
Sbjct: 1315 NPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSG 1374
Query: 390 PLGQQCPCVAQGPHG-GGKPSQAL 412
P G + P GP G G P A+
Sbjct: 1375 PPGPRGPLGDPGPRGPPGLPGTAM 1398
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 57.8 bits (138), Expect = 4e-08
Identities = 98/380 (25%), Positives = 115/380 (30%), Gaps = 59/380 (15%)
Query: 127 AQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVR 186
A P GF + P PG P GLRG + G RGP G
Sbjct: 114 AGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPG-------------- 159
Query: 187 PAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPH 246
P G GP + GA + VP P Q GP+ P
Sbjct: 160 PPG------------LPGPSGITIPGKPGA--------QGVPGPPGFQGEPGPQGEPGPP 199
Query: 247 ALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSA-------DGIPELTCYQRSKCGKCG 299
G QG G A DG+P G G
Sbjct: 200 GDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLP----------GAPG 249
Query: 300 TVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGT 359
GPPG PGA G + P G G QGP G E G G
Sbjct: 250 DKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGL 309
Query: 360 HSPIAARGRYRSHPKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
P PKG+ P PG G+ G+ QGP G GG P +AG
Sbjct: 310 IGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG-- 367
Query: 418 VSMCGMRPLQGWSRSLLPKWPPATLWL-GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQ 476
+ G R G P PP + GD +G P G+R L + G G
Sbjct: 368 --LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGP 425
Query: 477 RRSGGSWGETQSP-EAGAQG 495
+ G G P AGA G
Sbjct: 426 KGEPGFTGRPGGPGVAGALG 445
Score = 49.7 bits (117), Expect = 1e-05
Identities = 99/338 (29%), Positives = 114/338 (33%), Gaps = 72/338 (21%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGC-GLRTAQ----PAGFE-LLAWQHPQKP 143
AG PG G P T G GL G G GL + PAG LL +
Sbjct: 286 AGLPGPQGPSGAKGEPGTRG-PPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGE 344
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPW---RGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
G P P GL GP L GS+ RGP G ++G P P G GI R
Sbjct: 345 DGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAG-----PGGPPGV----PGI--R 393
Query: 201 AQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWG 259
GP + G GL P + P GP P P P
Sbjct: 394 GDQGPS--GLAGKPGVPGERGL--------PGAHGPPGPTGPKGEPGFTGRPGGPGVAGA 443
Query: 260 AGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
G Q G G RG S GIP L G G + QG PG + +PG
Sbjct: 444 LG--QKGDLGLPGQPGLRGPS--GIPGLQ-------GPAGPIGPQGLPGLKGEPGLPGPP 492
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G + G+ GT GPPG +PG+ G P G P G P
Sbjct: 493 G---------EGRAGEPGTAGPTGPPG------VPGSPGITGPPGPPG-----PPG--PP 530
Query: 380 GSSPGFGELWPLGQQCPCVAQGPHG-----GGKPSQAL 412
G+ F E G P G G GGKP L
Sbjct: 531 GAPGAFDETGIAGLHLP--NGGVEGAVLGKGGKPQFGL 566
Score = 43.9 bits (102), Expect = 6e-04
Identities = 79/325 (24%), Positives = 106/325 (32%), Gaps = 54/325 (16%)
Query: 140 PQKPPG--GPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
P+ PPG G P GL GP+ SG+ +G G+ GL + P G+ G
Sbjct: 271 PKGPPGVDGVGVPGAAGLPGPQGPSGA---KGEPGTRGPPGL-----IGPTGYGMPGL-- 320
Query: 198 WTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPC 257
GP G A L + P + GP+ P L +A
Sbjct: 321 -----PGPK----GDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG---- 367
Query: 258 WGAGHSQTWRQGAGEAQGTRG-GSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
R+G +G G G G+P + G G G PG + +P
Sbjct: 368 ------LPGRRGPPGPKGEAGPGGPPGVPGIR-------GDQGPSGLAGKPGVPGERGLP 414
Query: 317 GASGTRSPIATRRRSK-CGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKG 375
GA G P + G+ G G G + +PG G P G P G
Sbjct: 415 GAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGL--QGPAG 472
Query: 376 NCSPGSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPT--VSMCGMRPLQGWSRS 432
P PG GE GP G G+ + AGPT + G + G
Sbjct: 473 PIGPQGLPGLKGEPG---------LPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGP 523
Query: 433 LLPKWPPATLWLGDDLFTGSCHFPS 457
P PP D+ H P+
Sbjct: 524 PGPPGPPGAPGAFDETGIAGLHLPN 548
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 57.4 bits (137), Expect = 5e-08
Identities = 86/324 (26%), Positives = 104/324 (32%), Gaps = 38/324 (11%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQH--PQKPPGGPQ 148
G PG A+GE +G + G+ L P G + + + PPG P
Sbjct: 1294 GAPGRMGAQGEPGL-------AGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPG 1346
Query: 149 RPSPGGLRGPRSLSGSSPW---RGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGP 205
P G RG R G + G QG K G P P G A+
Sbjct: 1347 DRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQ-GQPGHPGPRGWPGPKGSKGAEGPK 1405
Query: 206 HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQT 265
K+ A G GL Q GP L A P G
Sbjct: 1406 GKQGKAGAPGRRGVQGL-----------QGLPGPRGVVGRQGLEGIAGPDGLPG------ 1448
Query: 266 WRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI 325
R G QG +G D P +R G G QGPPG + +PG G
Sbjct: 1449 -RDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKR 1507
Query: 326 ATRRRSKC-GKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPG 384
T R+ G G ++G PG E PG G P G KG P PG
Sbjct: 1508 GTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGF--KGIQGPRGPPG 1565
Query: 385 F----GELWPLGQQCPCVAQGPHG 404
G + PLG P GP G
Sbjct: 1566 LMGKEGIVGPLGILGPSGLPGPKG 1589
Score = 48.5 bits (114), Expect = 2e-05
Identities = 93/375 (24%), Positives = 123/375 (32%), Gaps = 75/375 (20%)
Query: 144 PGGPQRPSPGGLRGPRSLSG--SSPW----RGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
PG P RP P G +G G P +G +G + G+ P GH G+
Sbjct: 981 PGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGV--PGPKGSMGHPGMPGGM 1038
Query: 198 WTRAQAGPH----KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAA 252
T + GP R GA G P GP+ P+ +
Sbjct: 1039 GTPGEPGPQGPPGSRGPPGMRGAKGRRG--------------PRGPDGPAGEQGSRGLKG 1084
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNP 311
P P + R G G RG + G P G GPPGT
Sbjct: 1085 PPGP-----QGRPGRPGQQGVAGERGHLGSRGFP-------------GIPGPSGPPGTKG 1126
Query: 312 QCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRS 371
PG G + PI G G + +GPPG E +PG G + G
Sbjct: 1127 LPGEPGPQGPQGPI--------GPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLG--TP 1176
Query: 372 HPKGNCSPGSSPGF----GELWPLGQQCPCVAQGPHG--GGKPSQALAA--GP--TVSMC 421
+G PG G + P G + GP G G K + L GP +
Sbjct: 1177 GEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVT 1236
Query: 422 GMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGG 481
G+R +G S K G G+ + G+ + G G + S G
Sbjct: 1237 GVRGPEGKSGKQGEK--------GRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRG 1288
Query: 482 SWGETQSP-EAGAQG 495
S G T +P GAQG
Sbjct: 1289 SLGPTGAPGRMGAQG 1303
Score = 46.2 bits (108), Expect = 1e-04
Identities = 68/282 (24%), Positives = 97/282 (34%), Gaps = 51/282 (18%)
Query: 139 HPQKP-----PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH----PVRPAG 189
HP P PG P P G RGP + G+ RGP+G +G + P P G
Sbjct: 1031 HPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQG 1090
Query: 190 HLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-------EPS 242
+ G H + G S +K +P +P Q P GP P
Sbjct: 1091 RPGRPGQQGVAGERG-HLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPK 1149
Query: 243 SRPHALSTAASP---------RPCWGAGHSQTWRQ----------GAGEAQGTRGGSADG 283
P A+ P P G Q G G +G D
Sbjct: 1150 GPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDP 1209
Query: 284 IPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIA-TRRRSKCGKCGTVTAQ 342
P+ + + G+ G + GPPG PG +G R P + ++ + G+ G A+
Sbjct: 1210 GPD---GEHGEKGQEGLMGEDGPPGP------PGVTGVRGPEGKSGKQGEKGRTGAKGAK 1260
Query: 343 GPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPG 384
G G E +PG G +G +G+ P +PG
Sbjct: 1261 GYQGQLGEMGVPGDPGPPGTPGPKG-----SRGSLGPTGAPG 1297
Score = 41.6 bits (96), Expect = 0.003
Identities = 78/272 (28%), Positives = 94/272 (34%), Gaps = 51/272 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P P G P P GL G + G+ RGP G GL P P
Sbjct: 626 PPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGL----PGPPG----------A 671
Query: 200 RAQAGPHKRAVGAA-AGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCW 258
+ Q G + G A GA GL LS +P GP P + H P P
Sbjct: 672 KGQKGDPGLSPGKAHDGAKGDMGL-------PGLSGNP-GP-PGRKGH----KGYPGP-- 716
Query: 259 GAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
AGH QG +G+ G A G P + G G V GP G+ +PG
Sbjct: 717 -AGH--PGEQGQPGPEGSPG--AKGYP-------GRQGLPGPVGDPGPKGSRGYIGLPGL 764
Query: 319 SGTRSPIATRRRSKC-GKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNC 377
G R GK G + G PG E PG G + G P G
Sbjct: 765 FGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG-----PPG-- 817
Query: 378 SPGSSPGFGELWPLGQQCPCVAQGPHGG-GKP 408
PG G L P+G P +G G G+P
Sbjct: 818 VPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEP 849
Score = 37.4 bits (85), Expect = 0.052
Identities = 93/414 (22%), Positives = 131/414 (31%), Gaps = 74/414 (17%)
Query: 100 GETEAPLTVGRDSGLEA-----GVGVGCGLRTAQPAGFE----LLAWQHPQKPPGGPQRP 150
G + PL + S A VG RT +PA + + A + P+ P P P
Sbjct: 316 GPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKITATKIPKSLPTKPSAP 375
Query: 151 SPG--GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKR 208
S ++ P ++P S KS L T+ Q P R
Sbjct: 376 STSIVPIKSPHPTQKTAP-----SSFTKSALP------------------TQKQVPPTSR 412
Query: 209 AVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQ 268
V A P Q P P PS+RP +T++S +P ++
Sbjct: 413 PVPARVSRPAEK-------PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKIT 465
Query: 269 GAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATR 328
+ S P T S G+ + PP T +P SGT +P
Sbjct: 466 SHASKPASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPAT----MVPPTSGTSTP---- 517
Query: 329 RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN------CSPGSS 382
T A PG+ G+ PI + ++ PK + PG +
Sbjct: 518 --------RTAPAVPTPGS-------APTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKA 562
Query: 383 PGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATL 442
L L + P P+ LA +S G+S L P L
Sbjct: 563 ARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPL 622
Query: 443 WLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-EAGAQG 495
+G G C P G L P I G G R G +G P GA+G
Sbjct: 623 LMGPPGPKGDCGLPGPPGLPGL-PGIP--GARGPRGPPGPYGNPGLPGPPGAKG 673
Score = 35.8 bits (81), Expect = 0.15
Identities = 96/381 (25%), Positives = 123/381 (32%), Gaps = 62/381 (16%)
Query: 126 TAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV 185
T +P F L+ P PG + P P + S+P P ++ G
Sbjct: 478 THKPPPFTALS-SSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAP--AVPTPGSAPTGSK 534
Query: 186 RPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRP 245
+P G A + P G AA S L ++ P QP T P P
Sbjct: 535 KPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAP 594
Query: 246 HALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQG 305
A ++SPRP +G+S G+ P L G
Sbjct: 595 -AQFLSSSPRPT-SSGYSIFHLAGSTP-----------FPLL----------------MG 625
Query: 306 PPGTNPQCAMPGASGTRS----PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHS 361
PPG C +PG G P A R G G GPPG + PG S
Sbjct: 626 PPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGL----S 681
Query: 362 PIAARGRYRSHPKGNCS-PGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVS- 419
P G+ KG+ PG S G P G++ GP G P + GP S
Sbjct: 682 P----GKAHDGAKGDMGLPGLS---GNPGPPGRKGHKGYPGP--AGHPGEQGQPGPEGSP 732
Query: 420 ----MCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDG 475
G + L G PK + L G P S G+R L G G
Sbjct: 733 GAKGYPGRQGLPGPVGDPGPKGSRGYIGL-----PGLFGLPGSDGERGLPGVPGKRGKMG 787
Query: 476 QRRSGGSWGETQSPEAGAQGN 496
G +GE P G GN
Sbjct: 788 MPGFPGVFGERGPP--GLDGN 806
Score = 35.8 bits (81), Expect = 0.15
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPG 355
G G QG G+ PGA G P+ K G G++ GPPG G
Sbjct: 862 GVSGDPGFQGDKGSQGLPGFPGARGKPGPLG-----KVGDKGSIGFPGPPGPEGFPGDIG 916
Query: 356 AGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQ 410
G + P +G+ P PG G+L P G + P G G G+P +
Sbjct: 917 PPGDNGPEGMKGK----PGARGLPGPR---GQLGPEGDEGPMGPPGAPGLEGQPGR 965
Score = 35.0 bits (79), Expect = 0.26
Identities = 56/203 (27%), Positives = 68/203 (33%), Gaps = 50/203 (24%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPG 355
G G GP G+ MPG GT G QGPPG+ M G
Sbjct: 1015 GMMGPPGVPGPKGSMGHPGMPGGMGTP--------------GEPGPQGPPGSRGPPGMRG 1060
Query: 356 AGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAA 414
A G R P+G P GE G + P GP G G+P Q A
Sbjct: 1061 AKG-----------RRGPRGPDGPA-----GEQGSRGLKGP---PGPQGRPGRPGQQGVA 1101
Query: 415 GPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGD 474
G G +G+ P PP T L P G + I G
Sbjct: 1102 GER----GHLGSRGFPGIPGPSGPPGTKGL-----------PGEPGPQGPQGPIGPPGEM 1146
Query: 475 GQRRSGGSWGETQSP-EAGAQGN 496
G + G+ GE P EAG +G+
Sbjct: 1147 GPKGPPGAVGEPGLPGEAGMKGD 1169
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 56.6 bits (135), Expect = 8e-08
Identities = 100/365 (27%), Positives = 125/365 (34%), Gaps = 48/365 (13%)
Query: 143 PPGGPQRPSPGGLR---GPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAG----HLACGA 195
PPG P + P GLR G R L G++ G +G+ SG P PAG A G+
Sbjct: 885 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG-----PPGPAGSPGERGAAGS 939
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
G P + AAG K VP + PTG + P L A P
Sbjct: 940 GGPIGPPGRPGPQGPPGAAG--------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGP- 990
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P G +GT+G + P G G + G PG
Sbjct: 991 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPP---------GPPGPIGPVGQPGAAGADGE 1041
Query: 316 PGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYR 370
PGA G + + R G G + QG PG E G G P G R
Sbjct: 1042 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP 1101
Query: 371 SHPKGNCSPGSSP-GFGELWPLGQQC-PCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQG 428
+ P G P P G G L P G++ P + P G+P GP G R +G
Sbjct: 1102 AGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG---VKGPR----GERGEKG 1154
Query: 429 WSRSLLPKWPPATLW-LGDDLFTGS---CHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWG 484
S PP GDD G+ FP G +G G R G G
Sbjct: 1155 ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1214
Query: 485 ETQSP 489
+ SP
Sbjct: 1215 QPGSP 1219
Score = 56.6 bits (135), Expect = 8e-08
Identities = 95/361 (26%), Positives = 122/361 (33%), Gaps = 81/361 (22%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR 149
AGGPG EG + P G G R A +G P PPG P
Sbjct: 910 AGGPGLKGNEGPSGPPGPAGSP-----------GERGAAGSG-------GPIGPPGRPGP 951
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV---RPAGHLACGAGIWTRAQAG-P 205
P G G + + G +GP G + G+ PV PAG + + G P
Sbjct: 952 QGPPGAAGEKGVPGE---KGPIGPTGRDGV--QGPVGLPGPAGPPGVAGEDGDKGEVGDP 1006
Query: 206 HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-EPSSRPHALSTAASPRPCWGAGHSQ 264
++ G G P GP P +P A P GH
Sbjct: 1007 GQKGTKGNKGEHGPPG--------------PPGPIGPVGQPGAAGADGEPGARGPQGHF- 1051
Query: 265 TWRQGAGEAQGTRGGSA-------DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
GA +GTRG + G+P ++ + G G + GPPG G
Sbjct: 1052 ----GAKGDEGTRGFNGPPGPIGLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNG 1106
Query: 318 ASGTRSPIA-------TRRRSKCGKCGTVTAQGPPGT---------HAECAMPGAGGTHS 361
A G + P + + G+ G+ QG PG E PG G
Sbjct: 1107 ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPG 1166
Query: 362 PIAARGRYRSHPKGNCSPGSSPGF----GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
P G PKGN P PG GE P GQ A+G G G+P Q + GP
Sbjct: 1167 PKGPTG--DDGPKGNPGPVGFPGDPGPPGEGGPRGQD---GAKGDRGEDGEPGQPGSPGP 1221
Query: 417 T 417
T
Sbjct: 1222 T 1222
Score = 50.1 bits (118), Expect = 8e-06
Identities = 105/389 (26%), Positives = 123/389 (31%), Gaps = 100/389 (25%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P R P G G G+S +G +G KSG P G R Q
Sbjct: 715 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSG--------PRGE---RGPTGPRGQR 763
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHS 263
GP R +GA +SG P GP P R P P
Sbjct: 764 GP--RGATGKSGAKGTSG-----------GDGPHGP-PGER-------GLPGP------- 795
Query: 264 QTWRQGAGEAQGTRG----GSADGIPELTCYQRSKCGKCGTVPTQGPPG-TNPQCAMPGA 318
QG G +G DG+P QR + G G GPPG PQ GA
Sbjct: 796 ----QGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGPPGPPGVVGPQ----GA 846
Query: 319 SGTRSPIATRRR----SKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG------- 367
+G P+ R G+ G G GT + PGA G P RG
Sbjct: 847 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGL 906
Query: 368 ---------RYRSHPKGNCSPGSSPG----FGELWPLGQQCPCVAQGPHGG----GKPSQ 410
+ P G P SPG G P+G QGP G G P +
Sbjct: 907 PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 966
Query: 411 ALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQT 470
GPT G +QG P PP G+D G P G T
Sbjct: 967 KGPIGPT----GRDGVQGPVGLPGPAGPPGV--AGEDGDKGEVGDPGQKG---------T 1011
Query: 471 NGGDGQRRSGGSWGET----QSPEAGAQG 495
G G+ G G Q AGA G
Sbjct: 1012 KGNKGEHGPPGPPGPIGPVGQPGAAGADG 1040
Score = 50.1 bits (118), Expect = 8e-06
Identities = 74/280 (26%), Positives = 87/280 (31%), Gaps = 38/280 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
PQ P G P P G G L G RG G K+G P P G +
Sbjct: 795 PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTG-----PPGPPGVVGPQGAAGE 849
Query: 200 RAQAG----------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL- 248
G P ++ + AG + G P P P G L
Sbjct: 850 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKG--DPGPPGAPGKDGPAGLRGFPGERGLP 907
Query: 249 STAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPG 308
TA P G S G + G RG + G P G G QGPPG
Sbjct: 908 GTAGGPGLKGNEGPSGP--PGPAGSPGERGAAGSGGP---------IGPPGRPGPQGPPG 956
Query: 309 TNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR 368
+ +PG G P T R G G GPPG E G G +G
Sbjct: 957 AAGEKGVPGEKGPIGP--TGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGN 1014
Query: 369 YRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
KG P P G + P+GQ A G G P
Sbjct: 1015 -----KGEHGPPGPP--GPIGPVGQPGAAGADGEPGARGP 1047
Score = 49.7 bits (117), Expect = 1e-05
Identities = 88/332 (26%), Positives = 102/332 (30%), Gaps = 57/332 (17%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFEL----------LAWQHP 140
G PG G AP G L G G G + A E LA + P
Sbjct: 343 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 402
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
P G RP P G G L G S GPQG GL P AG R
Sbjct: 403 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGL--TGPPGKAGRRGRAGADGAR 460
Query: 201 AQAG----PHKRAVGAAAGAAQSSG----LFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
G R G G ++ +P P G + P L +
Sbjct: 461 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 520
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
PR G G G RG DG P+ G G++ QG PG Q
Sbjct: 521 GPRGLLG----PKGPPGIPGPPGVRG--MDG-PQ---------GPKGSLGPQGEPGPPGQ 564
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
PG G P + G G QG PG +PG G+ P H
Sbjct: 565 QGTPGTQGLPGP-----QGAIGPHGEKGPQGKPG------LPGMPGSDGP-------PGH 606
Query: 373 PKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
P PG+ G P G Q P GP G
Sbjct: 607 PGKEGPPGTK---GNQGPSGPQGPLGYPGPRG 635
Score = 46.6 bits (109), Expect = 9e-05
Identities = 75/279 (26%), Positives = 87/279 (31%), Gaps = 46/279 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P P G GPR G+ RG G + G P G + R
Sbjct: 1182 PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-----SPGPTGENGPPGPLGKRGP 1236
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGA 260
AG P GA G P P GP P+ +P P
Sbjct: 1237 AGSPGSEGRQGGKGAKGDPGAIG-----APGKTGPVGPAGPAGKPGPDGLRGLP-----G 1286
Query: 261 GHSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
Q R GA G G G+P L G G +G PG PG
Sbjct: 1287 SVGQQGRPGATGQAGPPGPVGPPGLPGLR-------GDAGAKGEKGHPGLIGLIGPPGEQ 1339
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G + G G QG PG E +PGA G PI G P G P
Sbjct: 1340 GEK-----------GDRGLPGPQGSPGQKGEMGIPGASG---PIGPGG-----PPGLPGP 1380
Query: 380 GSSPGF-GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
G G P G + QGP G G P + + P
Sbjct: 1381 AGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1419
Score = 43.5 bits (101), Expect = 7e-04
Identities = 76/295 (25%), Positives = 96/295 (32%), Gaps = 61/295 (20%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G G R G + G G+ G P R G G
Sbjct: 326 PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR----FGSGGG-----D 376
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA--------SP 254
GP A A A A + P P+ + P P +P + P
Sbjct: 377 KGPVVAAQEAQAQAILQQARLALRGPPGPMG-YTGRPGPLGQPGSPGLKGESGDLGPQGP 435
Query: 255 RPCWG--AGHSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTVP 302
R G + R+G A G RG DG+P L ++ G G
Sbjct: 436 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP-GEKGHRGDTGAQG 494
Query: 303 TQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSP 362
GPPG + + G G R + G G + +GPPG +PG G
Sbjct: 495 LPGPPGEDGERGDDGEIGPRG-----LPGESGPRGLLGPKGPPG------IPGPPGVRGM 543
Query: 363 IAARGRYRSHPKGNCSPGSSPGFGELWPLGQQ---------CPCVAQGPHGGGKP 408
+G PKG+ P PG P GQQ P A GPHG P
Sbjct: 544 DGPQG-----PKGSLGPQGEPG-----PPGQQGTPGTQGLPGPQGAIGPHGEKGP 588
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 56.6 bits (135), Expect = 8e-08
Identities = 100/365 (27%), Positives = 125/365 (34%), Gaps = 48/365 (13%)
Query: 143 PPGGPQRPSPGGLR---GPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAG----HLACGA 195
PPG P + P GLR G R L G++ G +G+ SG P PAG A G+
Sbjct: 864 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG-----PPGPAGSPGERGAAGS 918
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
G P + AAG K VP + PTG + P L A P
Sbjct: 919 GGPIGPPGRPGPQGPPGAAG--------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGP- 969
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P G +GT+G + P G G + G PG
Sbjct: 970 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPP---------GPPGPIGPVGQPGAAGADGE 1020
Query: 316 PGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYR 370
PGA G + + R G G + QG PG E G G P G R
Sbjct: 1021 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP 1080
Query: 371 SHPKGNCSPGSSP-GFGELWPLGQQC-PCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQG 428
+ P G P P G G L P G++ P + P G+P GP G R +G
Sbjct: 1081 AGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG---VKGPR----GERGEKG 1133
Query: 429 WSRSLLPKWPPATLW-LGDDLFTGS---CHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWG 484
S PP GDD G+ FP G +G G R G G
Sbjct: 1134 ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1193
Query: 485 ETQSP 489
+ SP
Sbjct: 1194 QPGSP 1198
Score = 56.6 bits (135), Expect = 8e-08
Identities = 95/361 (26%), Positives = 122/361 (33%), Gaps = 81/361 (22%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR 149
AGGPG EG + P G G R A +G P PPG P
Sbjct: 889 AGGPGLKGNEGPSGPPGPAGSP-----------GERGAAGSG-------GPIGPPGRPGP 930
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV---RPAGHLACGAGIWTRAQAG-P 205
P G G + + G +GP G + G+ PV PAG + + G P
Sbjct: 931 QGPPGAAGEKGVPGE---KGPIGPTGRDGV--QGPVGLPGPAGPPGVAGEDGDKGEVGDP 985
Query: 206 HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-EPSSRPHALSTAASPRPCWGAGHSQ 264
++ G G P GP P +P A P GH
Sbjct: 986 GQKGTKGNKGEHGPPG--------------PPGPIGPVGQPGAAGADGEPGARGPQGHF- 1030
Query: 265 TWRQGAGEAQGTRGGSA-------DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
GA +GTRG + G+P ++ + G G + GPPG G
Sbjct: 1031 ----GAKGDEGTRGFNGPPGPIGLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNG 1085
Query: 318 ASGTRSPIA-------TRRRSKCGKCGTVTAQGPPGT---------HAECAMPGAGGTHS 361
A G + P + + G+ G+ QG PG E PG G
Sbjct: 1086 ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPG 1145
Query: 362 PIAARGRYRSHPKGNCSPGSSPGF----GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
P G PKGN P PG GE P GQ A+G G G+P Q + GP
Sbjct: 1146 PKGPTG--DDGPKGNPGPVGFPGDPGPPGEGGPRGQD---GAKGDRGEDGEPGQPGSPGP 1200
Query: 417 T 417
T
Sbjct: 1201 T 1201
Score = 50.1 bits (118), Expect = 8e-06
Identities = 105/389 (26%), Positives = 123/389 (31%), Gaps = 100/389 (25%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P R P G G G+S +G +G KSG P G R Q
Sbjct: 694 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSG--------PRGE---RGPTGPRGQR 742
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHS 263
GP R +GA +SG P GP P R P P
Sbjct: 743 GP--RGATGKSGAKGTSG-----------GDGPHGP-PGER-------GLPGP------- 774
Query: 264 QTWRQGAGEAQGTRG----GSADGIPELTCYQRSKCGKCGTVPTQGPPG-TNPQCAMPGA 318
QG G +G DG+P QR + G G GPPG PQ GA
Sbjct: 775 ----QGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGPPGPPGVVGPQ----GA 825
Query: 319 SGTRSPIATRRR----SKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG------- 367
+G P+ R G+ G G GT + PGA G P RG
Sbjct: 826 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGL 885
Query: 368 ---------RYRSHPKGNCSPGSSPG----FGELWPLGQQCPCVAQGPHGG----GKPSQ 410
+ P G P SPG G P+G QGP G G P +
Sbjct: 886 PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 945
Query: 411 ALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQT 470
GPT G +QG P PP G+D G P G T
Sbjct: 946 KGPIGPT----GRDGVQGPVGLPGPAGPPGV--AGEDGDKGEVGDPGQKG---------T 990
Query: 471 NGGDGQRRSGGSWGET----QSPEAGAQG 495
G G+ G G Q AGA G
Sbjct: 991 KGNKGEHGPPGPPGPIGPVGQPGAAGADG 1019
Score = 50.1 bits (118), Expect = 8e-06
Identities = 74/280 (26%), Positives = 87/280 (31%), Gaps = 38/280 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
PQ P G P P G G L G RG G K+G P P G +
Sbjct: 774 PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTG-----PPGPPGVVGPQGAAGE 828
Query: 200 RAQAG----------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL- 248
G P ++ + AG + G P P P G L
Sbjct: 829 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKG--DPGPPGAPGKDGPAGLRGFPGERGLP 886
Query: 249 STAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPG 308
TA P G S G + G RG + G P G G QGPPG
Sbjct: 887 GTAGGPGLKGNEGPSGP--PGPAGSPGERGAAGSGGP---------IGPPGRPGPQGPPG 935
Query: 309 TNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR 368
+ +PG G P T R G G GPPG E G G +G
Sbjct: 936 AAGEKGVPGEKGPIGP--TGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGN 993
Query: 369 YRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
KG P P G + P+GQ A G G P
Sbjct: 994 -----KGEHGPPGPP--GPIGPVGQPGAAGADGEPGARGP 1026
Score = 49.7 bits (117), Expect = 1e-05
Identities = 88/332 (26%), Positives = 102/332 (30%), Gaps = 57/332 (17%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFEL----------LAWQHP 140
G PG G AP G L G G G + A E LA + P
Sbjct: 322 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 381
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
P G RP P G G L G S GPQG GL P AG R
Sbjct: 382 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGL--TGPPGKAGRRGRAGADGAR 439
Query: 201 AQAG----PHKRAVGAAAGAAQSSG----LFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
G R G G ++ +P P G + P L +
Sbjct: 440 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 499
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
PR G G G RG DG P+ G G++ QG PG Q
Sbjct: 500 GPRGLLG----PKGPPGIPGPPGVRG--MDG-PQ---------GPKGSLGPQGEPGPPGQ 543
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
PG G P + G G QG PG +PG G+ P H
Sbjct: 544 QGTPGTQGLPGP-----QGAIGPHGEKGPQGKPG------LPGMPGSDGP-------PGH 585
Query: 373 PKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
P PG+ G P G Q P GP G
Sbjct: 586 PGKEGPPGTK---GNQGPSGPQGPLGYPGPRG 614
Score = 46.6 bits (109), Expect = 9e-05
Identities = 75/279 (26%), Positives = 87/279 (31%), Gaps = 46/279 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P P G GPR G+ RG G + G P G + R
Sbjct: 1161 PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-----SPGPTGENGPPGPLGKRGP 1215
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGA 260
AG P GA G P P GP P+ +P P
Sbjct: 1216 AGSPGSEGRQGGKGAKGDPGAIG-----APGKTGPVGPAGPAGKPGPDGLRGLP-----G 1265
Query: 261 GHSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
Q R GA G G G+P L G G +G PG PG
Sbjct: 1266 SVGQQGRPGATGQAGPPGPVGPPGLPGLR-------GDAGAKGEKGHPGLIGLIGPPGEQ 1318
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G + G G QG PG E +PGA G PI G P G P
Sbjct: 1319 GEK-----------GDRGLPGPQGSPGQKGEMGIPGASG---PIGPGG-----PPGLPGP 1359
Query: 380 GSSPGF-GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
G G P G + QGP G G P + + P
Sbjct: 1360 AGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1398
Score = 43.5 bits (101), Expect = 7e-04
Identities = 76/295 (25%), Positives = 96/295 (32%), Gaps = 61/295 (20%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G G R G + G G+ G P R G G
Sbjct: 305 PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR----FGSGGG-----D 355
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA--------SP 254
GP A A A A + P P+ + P P +P + P
Sbjct: 356 KGPVVAAQEAQAQAILQQARLALRGPPGPMG-YTGRPGPLGQPGSPGLKGESGDLGPQGP 414
Query: 255 RPCWG--AGHSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTVP 302
R G + R+G A G RG DG+P L ++ G G
Sbjct: 415 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP-GEKGHRGDTGAQG 473
Query: 303 TQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSP 362
GPPG + + G G R + G G + +GPPG +PG G
Sbjct: 474 LPGPPGEDGERGDDGEIGPRG-----LPGESGPRGLLGPKGPPG------IPGPPGVRGM 522
Query: 363 IAARGRYRSHPKGNCSPGSSPGFGELWPLGQQ---------CPCVAQGPHGGGKP 408
+G PKG+ P PG P GQQ P A GPHG P
Sbjct: 523 DGPQG-----PKGSLGPQGEPG-----PPGQQGTPGTQGLPGPQGAIGPHGEKGP 567
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 56.6 bits (135), Expect = 8e-08
Identities = 100/365 (27%), Positives = 125/365 (34%), Gaps = 48/365 (13%)
Query: 143 PPGGPQRPSPGGLR---GPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAG----HLACGA 195
PPG P + P GLR G R L G++ G +G+ SG P PAG A G+
Sbjct: 971 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG-----PPGPAGSPGERGAAGS 1025
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
G P + AAG K VP + PTG + P L A P
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAG--------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGP- 1076
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P G +GT+G + P G G + G PG
Sbjct: 1077 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPP---------GPPGPIGPVGQPGAAGADGE 1127
Query: 316 PGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYR 370
PGA G + + R G G + QG PG E G G P G R
Sbjct: 1128 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP 1187
Query: 371 SHPKGNCSPGSSP-GFGELWPLGQQC-PCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQG 428
+ P G P P G G L P G++ P + P G+P GP G R +G
Sbjct: 1188 AGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG---VKGPR----GERGEKG 1240
Query: 429 WSRSLLPKWPPATLW-LGDDLFTGS---CHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWG 484
S PP GDD G+ FP G +G G R G G
Sbjct: 1241 ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG 1300
Query: 485 ETQSP 489
+ SP
Sbjct: 1301 QPGSP 1305
Score = 56.6 bits (135), Expect = 8e-08
Identities = 95/361 (26%), Positives = 122/361 (33%), Gaps = 81/361 (22%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR 149
AGGPG EG + P G G R A +G P PPG P
Sbjct: 996 AGGPGLKGNEGPSGPPGPAGSP-----------GERGAAGSG-------GPIGPPGRPGP 1037
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV---RPAGHLACGAGIWTRAQAG-P 205
P G G + + G +GP G + G+ PV PAG + + G P
Sbjct: 1038 QGPPGAAGEKGVPGE---KGPIGPTGRDGV--QGPVGLPGPAGPPGVAGEDGDKGEVGDP 1092
Query: 206 HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-EPSSRPHALSTAASPRPCWGAGHSQ 264
++ G G P GP P +P A P GH
Sbjct: 1093 GQKGTKGNKGEHGPPG--------------PPGPIGPVGQPGAAGADGEPGARGPQGHF- 1137
Query: 265 TWRQGAGEAQGTRGGSA-------DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPG 317
GA +GTRG + G+P ++ + G G + GPPG G
Sbjct: 1138 ----GAKGDEGTRGFNGPPGPIGLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNG 1192
Query: 318 ASGTRSPIA-------TRRRSKCGKCGTVTAQGPPGT---------HAECAMPGAGGTHS 361
A G + P + + G+ G+ QG PG E PG G
Sbjct: 1193 ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPG 1252
Query: 362 PIAARGRYRSHPKGNCSPGSSPGF----GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
P G PKGN P PG GE P GQ A+G G G+P Q + GP
Sbjct: 1253 PKGPTG--DDGPKGNPGPVGFPGDPGPPGEGGPRGQD---GAKGDRGEDGEPGQPGSPGP 1307
Query: 417 T 417
T
Sbjct: 1308 T 1308
Score = 50.1 bits (118), Expect = 8e-06
Identities = 105/389 (26%), Positives = 123/389 (31%), Gaps = 100/389 (25%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P R P G G G+S +G +G KSG P G R Q
Sbjct: 801 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSG--------PRGE---RGPTGPRGQR 849
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHS 263
GP R +GA +SG P GP P R P P
Sbjct: 850 GP--RGATGKSGAKGTSG-----------GDGPHGP-PGER-------GLPGP------- 881
Query: 264 QTWRQGAGEAQGTRG----GSADGIPELTCYQRSKCGKCGTVPTQGPPG-TNPQCAMPGA 318
QG G +G DG+P QR + G G GPPG PQ GA
Sbjct: 882 ----QGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGPPGPPGVVGPQ----GA 932
Query: 319 SGTRSPIATRRR----SKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG------- 367
+G P+ R G+ G G GT + PGA G P RG
Sbjct: 933 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGL 992
Query: 368 ---------RYRSHPKGNCSPGSSPG----FGELWPLGQQCPCVAQGPHGG----GKPSQ 410
+ P G P SPG G P+G QGP G G P +
Sbjct: 993 PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 1052
Query: 411 ALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQT 470
GPT G +QG P PP G+D G P G T
Sbjct: 1053 KGPIGPT----GRDGVQGPVGLPGPAGPPGV--AGEDGDKGEVGDPGQKG---------T 1097
Query: 471 NGGDGQRRSGGSWGET----QSPEAGAQG 495
G G+ G G Q AGA G
Sbjct: 1098 KGNKGEHGPPGPPGPIGPVGQPGAAGADG 1126
Score = 50.1 bits (118), Expect = 8e-06
Identities = 74/280 (26%), Positives = 87/280 (31%), Gaps = 38/280 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
PQ P G P P G G L G RG G K+G P P G +
Sbjct: 881 PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTG-----PPGPPGVVGPQGAAGE 935
Query: 200 RAQAG----------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL- 248
G P ++ + AG + G P P P G L
Sbjct: 936 TGPMGERGHPGPPGPPGEQGLPGTAGKEGTKG--DPGPPGAPGKDGPAGLRGFPGERGLP 993
Query: 249 STAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPG 308
TA P G S G + G RG + G P G G QGPPG
Sbjct: 994 GTAGGPGLKGNEGPSGP--PGPAGSPGERGAAGSGGP---------IGPPGRPGPQGPPG 1042
Query: 309 TNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR 368
+ +PG G P T R G G GPPG E G G +G
Sbjct: 1043 AAGEKGVPGEKGPIGP--TGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGN 1100
Query: 369 YRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
KG P P G + P+GQ A G G P
Sbjct: 1101 -----KGEHGPPGPP--GPIGPVGQPGAAGADGEPGARGP 1133
Score = 49.7 bits (117), Expect = 1e-05
Identities = 88/332 (26%), Positives = 102/332 (30%), Gaps = 57/332 (17%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFEL----------LAWQHP 140
G PG G AP G L G G G + A E LA + P
Sbjct: 429 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 488
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
P G RP P G G L G S GPQG GL P AG R
Sbjct: 489 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGL--TGPPGKAGRRGRAGADGAR 546
Query: 201 AQAG----PHKRAVGAAAGAAQSSG----LFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
G R G G ++ +P P G + P L +
Sbjct: 547 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 606
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
PR G G G RG DG P+ G G++ QG PG Q
Sbjct: 607 GPRGLLG----PKGPPGIPGPPGVRG--MDG-PQ---------GPKGSLGPQGEPGPPGQ 650
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
PG G P + G G QG PG +PG G+ P H
Sbjct: 651 QGTPGTQGLPGP-----QGAIGPHGEKGPQGKPG------LPGMPGSDGP-------PGH 692
Query: 373 PKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
P PG+ G P G Q P GP G
Sbjct: 693 PGKEGPPGTK---GNQGPSGPQGPLGYPGPRG 721
Score = 46.6 bits (109), Expect = 9e-05
Identities = 75/279 (26%), Positives = 87/279 (31%), Gaps = 46/279 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P P G GPR G+ RG G + G P G + R
Sbjct: 1268 PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPG-----SPGPTGENGPPGPLGKRGP 1322
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGA 260
AG P GA G P P GP P+ +P P
Sbjct: 1323 AGSPGSEGRQGGKGAKGDPGAIG-----APGKTGPVGPAGPAGKPGPDGLRGLP-----G 1372
Query: 261 GHSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
Q R GA G G G+P L G G +G PG PG
Sbjct: 1373 SVGQQGRPGATGQAGPPGPVGPPGLPGLR-------GDAGAKGEKGHPGLIGLIGPPGEQ 1425
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G + G G QG PG E +PGA G PI G P G P
Sbjct: 1426 GEK-----------GDRGLPGPQGSPGQKGEMGIPGASG---PIGPGG-----PPGLPGP 1466
Query: 380 GSSPGF-GELWPLGQQCPCVAQGPHG-GGKPSQALAAGP 416
G G P G + QGP G G P + + P
Sbjct: 1467 AGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1505
Score = 43.5 bits (101), Expect = 7e-04
Identities = 76/295 (25%), Positives = 96/295 (32%), Gaps = 61/295 (20%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G G R G + G G+ G P R G G
Sbjct: 412 PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR----FGSGGG-----D 462
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA--------SP 254
GP A A A A + P P+ + P P +P + P
Sbjct: 463 KGPVVAAQEAQAQAILQQARLALRGPPGPMG-YTGRPGPLGQPGSPGLKGESGDLGPQGP 521
Query: 255 RPCWG--AGHSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTVP 302
R G + R+G A G RG DG+P L ++ G G
Sbjct: 522 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP-GEKGHRGDTGAQG 580
Query: 303 TQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSP 362
GPPG + + G G R + G G + +GPPG +PG G
Sbjct: 581 LPGPPGEDGERGDDGEIGPRG-----LPGESGPRGLLGPKGPPG------IPGPPGVRGM 629
Query: 363 IAARGRYRSHPKGNCSPGSSPGFGELWPLGQQ---------CPCVAQGPHGGGKP 408
+G PKG+ P PG P GQQ P A GPHG P
Sbjct: 630 DGPQG-----PKGSLGPQGEPG-----PPGQQGTPGTQGLPGPQGAIGPHGEKGP 674
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 55.8 bits (133), Expect = 1e-07
Identities = 66/246 (26%), Positives = 82/246 (33%), Gaps = 31/246 (12%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ G P P P G++GP G + G +G G H V P G +
Sbjct: 1152 PRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGE 1211
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
R G + G + K P P S P GP A +T +P+
Sbjct: 1212 RGDPG--------SPGISPPGPRGKKGPPGPPGSSGPPGP-------AGATGRAPKDIPD 1256
Query: 260 AGHSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
G QG G RG G+P R + G CG GPPG PG
Sbjct: 1257 PG--PPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGP------PGP 1308
Query: 319 SGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCS 378
G + K G+ G V GP G H PG G P +G P G
Sbjct: 1309 PGYKG--FPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKG-----PTGLPG 1361
Query: 379 PGSSPG 384
P PG
Sbjct: 1362 PRGEPG 1367
Score = 47.8 bits (112), Expect = 4e-05
Identities = 74/282 (26%), Positives = 95/282 (33%), Gaps = 53/282 (18%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P G +GPR L G + G +G G C G R
Sbjct: 892 PFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEG--CPGAKGEPGEKGMSGLPGDRGL 949
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE--PSSRPHALSTAASPRPCWGA 260
G K A+G + + + K P +P P G + P R
Sbjct: 950 RGA-KGAIGPPGDEGEMAIISQKGTPGEP---GPPGDDGFPGERGD-------------- 991
Query: 261 GHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
+G QG RG P + R + G+ G GPPG PG++G
Sbjct: 992 -------KGTPGMQGRRGEPGRYGP--PGFHRGEPGEKGQPGPPGPPGP------PGSTG 1036
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH-----PKG 375
R I G G QG PG+ G G P +G SH PKG
Sbjct: 1037 LRGFI--------GFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKG 1088
Query: 376 NCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
PGS G G+Q QGP G G+P ++GP
Sbjct: 1089 --EPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGP 1128
Score = 45.4 bits (106), Expect = 2e-04
Identities = 100/423 (23%), Positives = 125/423 (29%), Gaps = 45/423 (10%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG + G+ P GL G C P PQ PG P P
Sbjct: 373 GFPGRYGETGDVGPP----GPPGLLGRPGEACAGMIGPPG---------PQGFPGLPGLP 419
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPH--KR 208
G+ G + P G GS G + + + C G GP K
Sbjct: 420 GEAGIPGRPDSAPGKP--GKPGSPGLPGAPGLQGLPGSSVIYCSVG-----NPGPQGIKG 472
Query: 209 AVGAAAGAAQSSGLFSKWV-PCQPLSQHPTGPE--PSSR--------PHALSTAASPRPC 257
VG G ++ + C+P P GP P + P L T P P
Sbjct: 473 KVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPP 532
Query: 258 WGAGH-SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G + GA G +G D + + + G G G PG++ +
Sbjct: 533 GAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHA 592
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G G P + G G GPPG PG G P R HP
Sbjct: 593 GEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPP-----GERGHPGVP 647
Query: 377 CSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLPK 436
PG G G C P G P GP G + G S S K
Sbjct: 648 GHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPK-GFPGPQGAPGLSGSDGHK 706
Query: 437 WPPATLWL----GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEAG 492
P T G F G P G++ SP + G G G G P G
Sbjct: 707 GRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSP-VGPPGPPGSPGVNGQKGIPGDPAFG 765
Query: 493 AQG 495
G
Sbjct: 766 HLG 768
Score = 44.7 bits (104), Expect = 3e-04
Identities = 93/390 (23%), Positives = 120/390 (30%), Gaps = 72/390 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAG--------HL 191
P P GP P G G +G GP G L + G CA + P G L
Sbjct: 361 PPLPLKGP--PGDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGL 418
Query: 192 ACGAGIWTRAQAGPHKRAVGAAAGAAQSSGL----FSKWVPCQPLSQHP------TGPEP 241
AGI R + P K + G + GL S + C + P GP
Sbjct: 419 PGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPG 478
Query: 242 SSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTV 301
P C G QG++G G+P G GT
Sbjct: 479 GRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSKGDL--GLP----------GWLGTK 526
Query: 302 PTQGPPGTNPQCAMPGASGTRSPIATR-------------RRSKCGKCGTVTAQGPPGTH 348
GPPG +PG G P + + + G G G PG+H
Sbjct: 527 GDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSH 586
Query: 349 ------AECAMPGAGGTHSPIAARGR---YRSHPKGNCSPGSSPGFGELWPLGQQCPCVA 399
E PG G H G+ P G P PG G P G++
Sbjct: 587 GRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGER----- 641
Query: 400 QGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSF 459
G P GP G++ +G + S +P G D G FP
Sbjct: 642 ---GHPGVPGHPGVRGPD----GLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQ 694
Query: 460 GQRCLSPSIQTNGGDGQRRSGGSWGETQSP 489
G LS G DG + G+ G + P
Sbjct: 695 GAPGLS------GSDGHKGRPGTPGTAEIP 718
Score = 42.0 bits (97), Expect = 0.002
Identities = 74/279 (26%), Positives = 85/279 (30%), Gaps = 41/279 (14%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVR-PAGHLACGAGIW--T 199
PPG P P GLRG G +G GS G R P G+ A +
Sbjct: 1025 PPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPP 1084
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
+ P GA+ GL P Q P G P S P C G
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGL--------PGIQGPRGSPGRPGPPGSS---GPPGCPG 1133
Query: 260 AGHSQTWRQGAGEA--QGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
R GE G RG D GIP G G G PG N +
Sbjct: 1134 DHGMPGLRGQPGEMGDPGPRGLQGDPGIP----------GPPGIKGPSGSPGLNGLHGLK 1183
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQG-----------PPGTHAECAMPGAGGTHSPIAA 365
G GT+ G G +G PPG + PG G+ P
Sbjct: 1184 GQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGP 1243
Query: 366 RGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
G PK PG G+ P G P A GP G
Sbjct: 1244 AGATGRAPKDIPDPGPP---GDQGPPGPDGPRGAPGPPG 1279
Score = 40.4 bits (93), Expect = 0.006
Identities = 88/350 (25%), Positives = 107/350 (30%), Gaps = 47/350 (13%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFE-LLAWQHPQKPPGGPQR 149
G PG G P G SGL G+ P G E +A + PG P
Sbjct: 921 GKPGAEGCPGAKGEPGEKGM-SGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGP 979
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRA 209
P G G R G+ +G +G + G H P + Q GP
Sbjct: 980 PGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPG----------EKGQPGPP--- 1026
Query: 210 VGAAAGAAQSSGLFSK-WVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQ 268
G S+GL P P Q G + A P+ G S
Sbjct: 1027 --GPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPP 1084
Query: 269 GAGEAQGTRG-------GSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
G G+ G G+P + R G+ G + GPPG MPG G
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQG-PRGSPGRPGPPGSSGPPGCPGDHGMPGLRG- 1142
Query: 322 RSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHS------PIAARGRYRSHP-- 373
P G G GPPG PG G H A G + P
Sbjct: 1143 -QPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPG 1201
Query: 374 -------KGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAG 415
KG SPG P G++ P GP G G P A A G
Sbjct: 1202 PVGIPGLKGERGDPGSPGISPPGPRGKKGP---PGPPGSSGPPGPAGATG 1248
Score = 36.2 bits (82), Expect = 0.12
Identities = 69/271 (25%), Positives = 85/271 (31%), Gaps = 59/271 (21%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P P G RG +SG + RG G G P P GH + + G
Sbjct: 122 GIPGHPGPPGPRGKPGMSGHNGSRGDPG--FPGGRGALGPGGPLGHPG------EKGEKG 173
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGHS 263
+GA G G +P P S GP P+ P P
Sbjct: 174 NSVFILGAVKGIQGDRG--DPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPP--------- 222
Query: 264 QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTN------PQCAMPG 317
G G +G G+ + + G G V QG PG C G
Sbjct: 223 -----GQPGRPGLKGNPGVGV-------KGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKG 270
Query: 318 ASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNC 377
G + G G V GPPG E + GA G G P+G+
Sbjct: 271 EKGIK-----------GIPGMVGLPGPPGRKGESGI-GAKGEKGIPGFPG-----PRGDP 313
Query: 378 SPGSSPGF----GELWPLGQQCPCVAQGPHG 404
SPGF GEL +G GP G
Sbjct: 314 GSYGSPGFPGLKGELGLVGDPGLFGLIGPKG 344
Score = 35.0 bits (79), Expect = 0.26
Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 305 GPPGTNPQCAMPGASGTR-SPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPI 363
GPPG +PG G R P G G + +GP G PG G
Sbjct: 768 GPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHS 827
Query: 364 AARGR-----YRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGP 416
RG P SPG+ G G+ +G P +G G P + A GP
Sbjct: 828 CERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGL--PGLPGRPGAHGP 883
Score = 34.7 bits (78), Expect = 0.34
Identities = 83/362 (22%), Positives = 114/362 (31%), Gaps = 51/362 (14%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G GP+ G S G +G G A P G +
Sbjct: 678 PPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGT--AEIPGPPGFRGDMGDPGFGGE 735
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
G G+ +G K +P P H GP + PR
Sbjct: 736 KGSSPVGPPGPPGSPGVNG--QKGIPGDPAFGH-LGPPGKRGLSGVPGIKGPR------- 785
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELTCYQ--RSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
G G G + GIP + + + G G GPPG + + PG G
Sbjct: 786 ------GDPGCPGAEGPA--GIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPG 837
Query: 321 TRS----PIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-------RY 369
P + G+ G V GP G +PG G H P G
Sbjct: 838 QPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDG 897
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGW 429
P G P PGF +P + P P G+P + +G + G R L+G
Sbjct: 898 LPGPPGPKGPRGLPGFPG-FPGERGKPGAEGCPGAKGEPGEKGMSG----LPGDRGLRGA 952
Query: 430 SRSLLPKWPPATLWL-------GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGS 482
++ P + + G+ G FP G + T G G+R G
Sbjct: 953 KGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDK------GTPGMQGRRGEPGR 1006
Query: 483 WG 484
+G
Sbjct: 1007 YG 1008
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 55.1 bits (131), Expect = 2e-07
Identities = 90/336 (26%), Positives = 108/336 (32%), Gaps = 44/336 (13%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG EG+ PL + G G G+R QP L + PG P
Sbjct: 576 GNPGVQGPEGKL-GPLGAPGEDGRPGPPG-SIGIR-GQPGSMGLPGPKGSSGDPGKPGEA 632
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH----PVRPAGHLACGAGIWTRAQAGPH 206
G+ G R G GP G + GL P P G Q P
Sbjct: 633 GNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGF-----------QGLPG 681
Query: 207 KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-----EPSSRPHALSTAASPRPCWGAG 261
G G VP P + P GP P R T G
Sbjct: 682 PPGPPGEGGKPGDQG-----VPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGG 736
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
H +G+ GT G + G P L + G+ G T GP G GA GT
Sbjct: 737 HGPDGPKGSPGPSGTPGDT--GPPGL----QGMPGERGIAGTPGPKGDRGGIGEKGAEGT 790
Query: 322 RSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGS 381
R G G + GP G E PG G P +RG S +G P
Sbjct: 791 AGNDGAR-----GLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGS--RGENGPTG 843
Query: 382 SPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGP 416
+ GF G P GQ P V P G+ A + GP
Sbjct: 844 AVGFAGPQGPDGQ--PGVKGEPGEPGQKGDAGSPGP 877
Score = 53.9 bits (128), Expect = 5e-07
Identities = 91/359 (25%), Positives = 120/359 (33%), Gaps = 77/359 (21%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P P G RG + L G G GS ++G P G + + R
Sbjct: 290 PGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAG--------PTGPMGAMGPLGPRGMP 341
Query: 204 GPHKR-AVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
G R A G + G+ K P PL + P + + A P
Sbjct: 342 GERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNP--GMKGEAGP-------- 391
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTR 322
T +G QG RG + GPPG +PGA GT
Sbjct: 392 --TGARGPEGPQGQRGET------------------------GPPGPVGSPGLPGAIGTD 425
Query: 323 SPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSS 382
+ G G+ GPPG+ PG G+ P RG+ PG
Sbjct: 426 GTPGAK-----GPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQ----------PGDP 470
Query: 383 --PGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPP 439
PGF GE P G+ P QGP G P + GP +G ++ P P
Sbjct: 471 GVPGFKGEAGPKGEPGPHGIQGPI--GPPGEEGKRGP----------RGDPGTVGPPGPV 518
Query: 440 ATLWL-GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEA-GAQGN 496
G+ F GS P G + + ++G G + G GE P A G GN
Sbjct: 519 GERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGN 577
Score = 52.8 bits (125), Expect = 1e-06
Identities = 74/292 (25%), Positives = 98/292 (33%), Gaps = 41/292 (14%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL--------CCAHPVRPA------ 188
P G P P G RGP+ G RGPQG + G+ HP P
Sbjct: 133 PAGPPGSQGPRGERGPKGRPGP---RGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSR 189
Query: 189 GHLACGAGIWTRAQAGPHKRAVGAAAG----------AAQSSGLFSKWVPCQPLSQHPTG 238
A AG+ ++ G + + G Q G P +P P G
Sbjct: 190 PFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMG 249
Query: 239 PEPSSRPHAL--STAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCG 296
P S P P + G+ A+G G A G+P L ++ K G
Sbjct: 250 PIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG--APGLPGLKGHRGHK-G 306
Query: 297 KCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGA 356
G G PG+ + G G P+ R G+ G + QG PG MPG
Sbjct: 307 LEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP--RGMPGERGRLGPQGAPGQRGAHGMPGK 364
Query: 357 GGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G P+ P + PG+ GE P G + P QG G P
Sbjct: 365 PGPMGPLGI-------PGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGP 409
Score = 50.1 bits (118), Expect = 8e-06
Identities = 96/355 (27%), Positives = 116/355 (32%), Gaps = 52/355 (14%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQG-SLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PG P + G GP+ L+GS GP G K G P G +
Sbjct: 863 PGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGP 922
Query: 203 AG----------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
AG P K G S G P P P GP P
Sbjct: 923 AGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGP----PGGPGDKGDPGEDGQPG 978
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPEL--TCYQRSKCGKCGTVPTQ------ 304
P AG T ++G G RG G+P L K G G +
Sbjct: 979 PDGPPGPAG--TTGQRGIVGMPGQRG--ERGMPGLPGPAGTPGKVGPTGATGDKGPPGPV 1034
Query: 305 GPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIA 364
GPPG+N PG G T R G G +G PG GA GT P+
Sbjct: 1035 GPPGSNGPVGEPGPEGPAGNDGTPGRD--GAVGERGDRGDPGPAGLPGSQGAPGTPGPVG 1092
Query: 365 ARG--RYRSHPKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHGG-GKPSQALAAGPTVSM 420
A G R P G+ P PG G+ G Q P +G HG G Q G T
Sbjct: 1093 APGDAGQRGDP-GSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFT--- 1148
Query: 421 CGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDG 475
G++ L G PP G + GS P FG R + +G +G
Sbjct: 1149 -GLQGLPG---------PP-----GPNGEQGSAGIPGPFGPRGPPGPVGPSGKEG 1188
Score = 45.4 bits (106), Expect = 2e-04
Identities = 68/247 (27%), Positives = 86/247 (34%), Gaps = 29/247 (11%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRP-AGHLACGAGI-WTRA 201
PG P P G +G R GSS +G QG + G P P A L G+
Sbjct: 530 PGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPG----EPGLPGARGLTGNPGVQGPEG 585
Query: 202 QAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG 261
+ GP +GA + S + QP S GP+ SS P AG
Sbjct: 586 KLGP----LGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSS-----GDPGKPGEAGNAG 636
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQ---GPPGTNPQCAMPGA 318
++GA G G S P +R + G G Q GPPG + PG
Sbjct: 637 --VPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGD 694
Query: 319 SGT-RSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNC 377
G P A G+ G +G PG G G H P PKG+
Sbjct: 695 QGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGP--------DGPKGSP 746
Query: 378 SPGSSPG 384
P +PG
Sbjct: 747 GPSGTPG 753
Score = 45.1 bits (105), Expect = 2e-04
Identities = 89/363 (24%), Positives = 112/363 (30%), Gaps = 58/363 (15%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P P G P P GL GP G+ RG G G A P P G
Sbjct: 808 PAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGF--AGPQGPDGQPGVKGEPGE 865
Query: 200 RAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSR-PHALSTAASP 254
Q G P + + + G +G VP + GP ++ P + P
Sbjct: 866 PGQKGDAGSPGPQGLAGSPGPHGPNG-----VPGLKGGRGTQGPPGATGFPGSAGRVGPP 920
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
P G + G +G G D R G G +G PG + Q
Sbjct: 921 GPAGAPGPAGP--LGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQ-- 976
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPK 374
PG G P T G+ G V G G +PG GT + G + K
Sbjct: 977 -PGPDGPPGPAGT-----TGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTG--ATGDK 1028
Query: 375 GNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGPTVSMCGMRPLQGWSRSL 433
G P PG P+G+ P +GP G G P + A G
Sbjct: 1029 GPPGPVGPPGSN--GPVGEPGP---EGPAGNDGTPGRDGAVGER---------------- 1067
Query: 434 LPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-EAG 492
GD G P S G + G GQR GS G P AG
Sbjct: 1068 -----------GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAG 1116
Query: 493 AQG 495
+G
Sbjct: 1117 KRG 1119
Score = 37.7 bits (86), Expect = 0.040
Identities = 61/245 (24%), Positives = 74/245 (30%), Gaps = 50/245 (20%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P P G P P G GP +G+ G G++ + G PAG L G
Sbjct: 1030 PPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERG--DRGDPGPAG-LPGSQG--A 1084
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
GP VGA A Q P S+ P GP
Sbjct: 1085 PGTPGP----VGAPGDAGQRG---------DPGSRGPIGPP------------------- 1112
Query: 260 AGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
+ ++G QG RG D Q+ G G GPPG N + G
Sbjct: 1113 ---GRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIP 1169
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
G P R G G +G PG PG G+ G P G P
Sbjct: 1170 GPFGP-----RGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEG-----PPGEPGP 1219
Query: 380 GSSPG 384
PG
Sbjct: 1220 PGPPG 1224
Score = 33.5 bits (75), Expect = 0.75
Identities = 36/137 (26%), Positives = 49/137 (35%), Gaps = 28/137 (20%)
Query: 275 GTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCG 334
G RG P + R + G G +GP G + + +PG G
Sbjct: 126 GIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPG-------------- 171
Query: 335 KCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGF--GELWPLG 392
A GPPG + PG G P +A+ G GS G G + P+G
Sbjct: 172 ------APGPPGHPSH---PGPDGLSRPFSAQMAGLDEKSG---LGSQVGLMPGSVGPVG 219
Query: 393 QQCPCVAQGPHGGGKPS 409
+ P QG GG P+
Sbjct: 220 PRGPQGLQGQQGGAGPT 236
Score = 30.4 bits (67), Expect = 6.3
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 140 PQKPPG--GPQ----RPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLAC 193
P+ PPG GP P P G GP + GS GP+G + G P P GHL
Sbjct: 1174 PRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPG--PPGPPGPPGHLTA 1231
Query: 194 GAG 196
G
Sbjct: 1232 ALG 1234
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 54.7 bits (130), Expect = 3e-07
Identities = 82/271 (30%), Positives = 91/271 (33%), Gaps = 46/271 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWR-GPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
PPG P P GL GP P+R G GS G + A + A I R
Sbjct: 485 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGS---KGPTISAQEAQAQAILQQARIALRG 541
Query: 202 QAGP-HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG----PEPSSRPHALSTAASPRP 256
GP G SSG +K P Q P G P P+ +P RP
Sbjct: 542 PPGPMGLTGRPGPVGGPGSSG--AKGESGDPGPQGPRGVQGPPGPTGKP-----GKRGRP 594
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G G A+G RG DG+P L G G QGPPG M
Sbjct: 595 GADGGRGMPGEPG---AKGDRG--FDGLPGLP----GDKGHRGERGPQGPPGPPGDDGMR 645
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G G P R G+ G GP GT PG G P PKGN
Sbjct: 646 GEDGEIGP-----RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--------PGPKGN 692
Query: 377 CSPGSSPGFGELWPLGQQ---CPCVAQGPHG 404
P PG P GQQ P GP G
Sbjct: 693 MGPQGEPG-----PPGQQGNPGPQGLPGPQG 718
Score = 52.0 bits (123), Expect = 2e-06
Identities = 74/276 (26%), Positives = 89/276 (32%), Gaps = 50/276 (18%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P GL GP+ G +GPQG +GL A P GH
Sbjct: 701 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGAD--GPPGH------------ 746
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
P K GA G P GP P + A R G+
Sbjct: 747 --PGKEGQSGEKGALGPPG--------------PQGPIGYPGPRGVKGADGVRGLKGS-K 789
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGP---PGTNPQC------ 313
+ G +G G D R + G G GP PG + Q
Sbjct: 790 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 849
Query: 314 ---AMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RY 369
+PG G + P + G G A G G PG G P RG R
Sbjct: 850 GVPGLPGYPGRQGP-----KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG 904
Query: 370 RSHPKGNCSP-GSSPGFGELWPLGQQCPCVAQGPHG 404
P G P G+S G G P G++ P QGP G
Sbjct: 905 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG 940
Score = 52.0 bits (123), Expect = 2e-06
Identities = 72/282 (25%), Positives = 86/282 (30%), Gaps = 32/282 (11%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-PVRPAGHLACGAG 196
Q P P G P G GP L G +GP G + G P PAG
Sbjct: 1062 QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGP 1121
Query: 197 IWTRAQAGP--------HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL 248
+ AGP K +G P P Q P G P
Sbjct: 1122 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG-----APGIA 1176
Query: 249 STAASPRPCWGAG-HSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGP 306
P P G Q +GA G G G+P ++ + G G + GP
Sbjct: 1177 GGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG-PPGEKGENGDVGPMGPPGP 1235
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG GA G + P G G V +G PG PG G P R
Sbjct: 1236 PGPRGPQGPNGADGPQGP-----PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER 1290
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G KG P + G P G + P GP G P
Sbjct: 1291 GE-----KGEAGPPGAAG-----PPGAKGPPGDDGPKGNPGP 1322
Score = 51.2 bits (121), Expect = 3e-06
Identities = 77/283 (27%), Positives = 92/283 (32%), Gaps = 45/283 (15%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSG-LCCAHPVRPAGHLACGAG 196
Q PQ P G P P G G L G RG G K+G V P G
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 992
Query: 197 IWTRAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
I R G P ++ + AAG + G P G P L
Sbjct: 993 IGERGHPGPPGPPGEQGLPGAAGKEGAKG-----------DPGPQGISGKDGPAGLRGFP 1041
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTV------PTQGP 306
R GA QGA +G G P + +R G G + QGP
Sbjct: 1042 GERGLPGA-------QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1094
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG + PG G + P G+ G G PG PG G I
Sbjct: 1095 PGPAGEKGAPGEKGPQGP--------AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEP 1146
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKP 408
G+ S KG+ PG P G Q P A G GG G+P
Sbjct: 1147 GQKGS--KGDKGENGPPG-----PPGLQGPVGAPGIAGGDGEP 1182
Score = 47.8 bits (112), Expect = 4e-05
Identities = 82/336 (24%), Positives = 104/336 (30%), Gaps = 58/336 (17%)
Query: 88 AWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGP 147
A GGP R E P G + G P GF PPG P
Sbjct: 1281 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP-----GDPGPPGEP 1335
Query: 148 QRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHK 207
G+ G + G GP G ++G P P G + GP
Sbjct: 1336 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG-----PPGPPG------------KRGP-P 1377
Query: 208 RAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGHSQTW 266
A GA + P P GP+ P+ +P P P
Sbjct: 1378 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP---------- 1427
Query: 267 RQGAGEAQGTRGGSA-DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI 325
GE QG G + DG P G G +G PG+ + PG G P
Sbjct: 1428 ---VGE-QGLPGAAGQDGPP-------GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP- 1475
Query: 326 ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH-PKGNCSPGSSPG 384
+ + G G QG PG + +PG G P G PKGN
Sbjct: 1476 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN-------- 1526
Query: 385 FGELWPLGQQCPCVAQGPHGG-GKPSQALAAGPTVS 419
G P GQ+ GP G G P + + P +S
Sbjct: 1527 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILS 1562
Score = 46.6 bits (109), Expect = 9e-05
Identities = 85/361 (23%), Positives = 99/361 (27%), Gaps = 84/361 (23%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P G GP G RGPQG G P P G + G+ + +
Sbjct: 1215 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG-----PQGPPGSVGSVGGVGEKGEP 1269
Query: 204 G-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRP 256
G P + VG G G GP
Sbjct: 1270 GEAGNPGPPGEAGVGGPKGERGEKG--------------EAGPP---------------- 1299
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
GA G +G D P + G G GPPG
Sbjct: 1300 ------------GAAGPPGAKGPPGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQD 1341
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKG 375
G G + G+ G GPPG E PG G P A G R KG
Sbjct: 1342 GVGGDK-----------GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG 1390
Query: 376 NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLP 435
+ G P G+ P QGP G P V G+ G P
Sbjct: 1391 AKGEAGAEG-----PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1445
Query: 436 KWPPATLWL-GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEAGAQ 494
PP L GD G P G I G G++ G G SP A
Sbjct: 1446 MGPPGLPGLKGDPGSKGEKGHPGLIG------LIGPPGEQGEKGDRGLPGTQGSPGAKGD 1499
Query: 495 G 495
G
Sbjct: 1500 G 1500
Score = 44.3 bits (103), Expect = 4e-04
Identities = 97/381 (25%), Positives = 119/381 (31%), Gaps = 61/381 (16%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
Q P PPG G GPR L G + GP+G L G A P +P G
Sbjct: 633 QGPPGPPGDDGMRGEDGEIGPRGLPGEA---GPRGLLGPRGTPGA-PGQP-GMAGVDGPP 687
Query: 198 WTRAQAGPH-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE----PSSRPHALSTAA 252
+ GP + G GL P Q P GP P +P
Sbjct: 688 GPKGNMGPQGEPGPPGQQGNPGPQGL--------PGPQGPIGPPGEKGPQGKPGLAGLPG 739
Query: 253 SPRPCWGAG-HSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTV 301
+ P G Q+ +GA G +G ADG+ R G G
Sbjct: 740 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV-------RGLKGSKGEK 792
Query: 302 PTQGPPGTNPQCAMPGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAE------C 351
G PG + G G I R G+ G GP G E
Sbjct: 793 GEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 852
Query: 352 AMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQA 411
+PG G P + G + P N G+ G+ P GQ+ P +G G
Sbjct: 853 GLPGYPGRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG------- 904
Query: 412 LAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTN 471
A GPT G +G S P PP G G FP G
Sbjct: 905 -ARGPT----GKPGPKGTSGGDGPPGPPGE--RGPQGPQGPVGFPGPKGPPGPPGKDGLP 957
Query: 472 GGDGQRRSGGSWGETQSPEAG 492
G GQR G G+T P G
Sbjct: 958 GHPGQRGETGFQGKTGPPGPG 978
Score = 42.0 bits (97), Expect = 0.002
Identities = 83/370 (22%), Positives = 117/370 (31%), Gaps = 70/370 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL----CCAHPVRPAGHLACGA 195
P P G P P G RGP +G+ +G +G+ ++G PV P G
Sbjct: 1358 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417
Query: 196 GIWTRAQAGP-HKRAVGAAAGAAQSSGLFSKWVPCQP-LSQHPTGPEPSSRPHALSTAAS 253
R GP ++ + AAG G P P L P P +
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGP--PGLPGLKGDPGSKGEKGHPGLIGLIGP 1475
Query: 254 PRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
P + +G QG+ G D GIP G G + GPPG
Sbjct: 1476 P-----GEQGEKGDRGLPGTQGSPGAKGDGGIP----------GPAGPLGPPGPPG---- 1516
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
+PG G + + G G G PG PG PI + + R H
Sbjct: 1517 --LPGPQGPKG-----NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRH 1569
Query: 373 PKG----------NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCG 422
+G + S G FG L L Q + K P +
Sbjct: 1570 TEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHM--------KFPMGTQTNPARTCKD 1621
Query: 423 MRPLQGWSRSLLPKWPPATLWL------GDDLFTGSCHFPSSFGQRCLSPSIQTNG---G 473
++ P +P W+ D F C+F S G+ C+ P ++ G
Sbjct: 1622 LQLSH-------PDFPDGEYWIDPNQGCSGDSFKVYCNFTSG-GETCIYPDKKSEGVRIS 1673
Query: 474 DGQRRSGGSW 483
+ GSW
Sbjct: 1674 SWPKEKPGSW 1683
Score = 38.1 bits (87), Expect = 0.030
Identities = 68/230 (29%), Positives = 74/230 (32%), Gaps = 52/230 (22%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMP- 354
G G GPPG PG G R P + G G GPPGT
Sbjct: 457 GPAGPAGIMGPPGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPGPPGTMLMLPFRY 511
Query: 355 GAGGTHSP-----------------IAARG-------RYRSHPKGNCSPGSSPGFGELWP 390
G G+ P IA RG R P G PGSS GE
Sbjct: 512 GGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG--GPGSSGAKGESGD 569
Query: 391 LGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLF 449
G Q P QGP G GKP + RP R +P P A GD F
Sbjct: 570 PGPQGPRGVQGPPGPTGKPGKR-----------GRPGADGGRG-MPGEPGAK---GDRGF 614
Query: 450 TGSCHFPSS---FGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-EAGAQG 495
G P G+R G DG R G G P EAG +G
Sbjct: 615 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 664
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 54.7 bits (130), Expect = 3e-07
Identities = 82/271 (30%), Positives = 91/271 (33%), Gaps = 46/271 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWR-GPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
PPG P P GL GP P+R G GS G + A + A I R
Sbjct: 434 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGS---KGPTISAQEAQAQAILQQARIALRG 490
Query: 202 QAGP-HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG----PEPSSRPHALSTAASPRP 256
GP G SSG +K P Q P G P P+ +P RP
Sbjct: 491 PPGPMGLTGRPGPVGGPGSSG--AKGESGDPGPQGPRGVQGPPGPTGKP-----GKRGRP 543
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G G A+G RG DG+P L G G QGPPG M
Sbjct: 544 GADGGRGMPGEPG---AKGDRG--FDGLPGLP----GDKGHRGERGPQGPPGPPGDDGMR 594
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G G P R G+ G GP GT PG G P PKGN
Sbjct: 595 GEDGEIGP-----RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--------PGPKGN 641
Query: 377 CSPGSSPGFGELWPLGQQ---CPCVAQGPHG 404
P PG P GQQ P GP G
Sbjct: 642 MGPQGEPG-----PPGQQGNPGPQGLPGPQG 667
Score = 52.0 bits (123), Expect = 2e-06
Identities = 74/276 (26%), Positives = 89/276 (32%), Gaps = 50/276 (18%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P GL GP+ G +GPQG +GL A P GH
Sbjct: 650 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGAD--GPPGH------------ 695
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
P K GA G P GP P + A R G+
Sbjct: 696 --PGKEGQSGEKGALGPPG--------------PQGPIGYPGPRGVKGADGVRGLKGS-K 738
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGP---PGTNPQC------ 313
+ G +G G D R + G G GP PG + Q
Sbjct: 739 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 798
Query: 314 ---AMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RY 369
+PG G + P + G G A G G PG G P RG R
Sbjct: 799 GVPGLPGYPGRQGP-----KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG 853
Query: 370 RSHPKGNCSP-GSSPGFGELWPLGQQCPCVAQGPHG 404
P G P G+S G G P G++ P QGP G
Sbjct: 854 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG 889
Score = 52.0 bits (123), Expect = 2e-06
Identities = 72/282 (25%), Positives = 86/282 (30%), Gaps = 32/282 (11%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-PVRPAGHLACGAG 196
Q P P G P G GP L G +GP G + G P PAG
Sbjct: 1011 QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGP 1070
Query: 197 IWTRAQAGP--------HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL 248
+ AGP K +G P P Q P G P
Sbjct: 1071 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG-----APGIA 1125
Query: 249 STAASPRPCWGAG-HSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGP 306
P P G Q +GA G G G+P ++ + G G + GP
Sbjct: 1126 GGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG-PPGEKGENGDVGPMGPPGP 1184
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG GA G + P G G V +G PG PG G P R
Sbjct: 1185 PGPRGPQGPNGADGPQGP-----PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER 1239
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G KG P + G P G + P GP G P
Sbjct: 1240 GE-----KGEAGPPGAAG-----PPGAKGPPGDDGPKGNPGP 1271
Score = 51.2 bits (121), Expect = 3e-06
Identities = 77/283 (27%), Positives = 92/283 (32%), Gaps = 45/283 (15%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSG-LCCAHPVRPAGHLACGAG 196
Q PQ P G P P G G L G RG G K+G V P G
Sbjct: 882 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 941
Query: 197 IWTRAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
I R G P ++ + AAG + G P G P L
Sbjct: 942 IGERGHPGPPGPPGEQGLPGAAGKEGAKG-----------DPGPQGISGKDGPAGLRGFP 990
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTV------PTQGP 306
R GA QGA +G G P + +R G G + QGP
Sbjct: 991 GERGLPGA-------QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1043
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG + PG G + P G+ G G PG PG G I
Sbjct: 1044 PGPAGEKGAPGEKGPQGP--------AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEP 1095
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKP 408
G+ S KG+ PG P G Q P A G GG G+P
Sbjct: 1096 GQKGS--KGDKGENGPPG-----PPGLQGPVGAPGIAGGDGEP 1131
Score = 47.8 bits (112), Expect = 4e-05
Identities = 82/336 (24%), Positives = 104/336 (30%), Gaps = 58/336 (17%)
Query: 88 AWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGP 147
A GGP R E P G + G P GF PPG P
Sbjct: 1230 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP-----GDPGPPGEP 1284
Query: 148 QRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHK 207
G+ G + G GP G ++G P P G + GP
Sbjct: 1285 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG-----PPGPPG------------KRGP-P 1326
Query: 208 RAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGHSQTW 266
A GA + P P GP+ P+ +P P P
Sbjct: 1327 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP---------- 1376
Query: 267 RQGAGEAQGTRGGSA-DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI 325
GE QG G + DG P G G +G PG+ + PG G P
Sbjct: 1377 ---VGE-QGLPGAAGQDGPP-------GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP- 1424
Query: 326 ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH-PKGNCSPGSSPG 384
+ + G G QG PG + +PG G P G PKGN
Sbjct: 1425 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN-------- 1475
Query: 385 FGELWPLGQQCPCVAQGPHGG-GKPSQALAAGPTVS 419
G P GQ+ GP G G P + + P +S
Sbjct: 1476 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILS 1511
Score = 46.6 bits (109), Expect = 9e-05
Identities = 85/361 (23%), Positives = 99/361 (27%), Gaps = 84/361 (23%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P G GP G RGPQG G P P G + G+ + +
Sbjct: 1164 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG-----PQGPPGSVGSVGGVGEKGEP 1218
Query: 204 G-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRP 256
G P + VG G G GP
Sbjct: 1219 GEAGNPGPPGEAGVGGPKGERGEKG--------------EAGPP---------------- 1248
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
GA G +G D P + G G GPPG
Sbjct: 1249 ------------GAAGPPGAKGPPGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQD 1290
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKG 375
G G + G+ G GPPG E PG G P A G R KG
Sbjct: 1291 GVGGDK-----------GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG 1339
Query: 376 NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLP 435
+ G P G+ P QGP G P V G+ G P
Sbjct: 1340 AKGEAGAEG-----PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1394
Query: 436 KWPPATLWL-GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEAGAQ 494
PP L GD G P G I G G++ G G SP A
Sbjct: 1395 MGPPGLPGLKGDPGSKGEKGHPGLIG------LIGPPGEQGEKGDRGLPGTQGSPGAKGD 1448
Query: 495 G 495
G
Sbjct: 1449 G 1449
Score = 44.3 bits (103), Expect = 4e-04
Identities = 97/381 (25%), Positives = 119/381 (31%), Gaps = 61/381 (16%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
Q P PPG G GPR L G + GP+G L G A P +P G
Sbjct: 582 QGPPGPPGDDGMRGEDGEIGPRGLPGEA---GPRGLLGPRGTPGA-PGQP-GMAGVDGPP 636
Query: 198 WTRAQAGPH-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE----PSSRPHALSTAA 252
+ GP + G GL P Q P GP P +P
Sbjct: 637 GPKGNMGPQGEPGPPGQQGNPGPQGL--------PGPQGPIGPPGEKGPQGKPGLAGLPG 688
Query: 253 SPRPCWGAG-HSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTV 301
+ P G Q+ +GA G +G ADG+ R G G
Sbjct: 689 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV-------RGLKGSKGEK 741
Query: 302 PTQGPPGTNPQCAMPGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAE------C 351
G PG + G G I R G+ G GP G E
Sbjct: 742 GEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 801
Query: 352 AMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQA 411
+PG G P + G + P N G+ G+ P GQ+ P +G G
Sbjct: 802 GLPGYPGRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG------- 853
Query: 412 LAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTN 471
A GPT G +G S P PP G G FP G
Sbjct: 854 -ARGPT----GKPGPKGTSGGDGPPGPPGE--RGPQGPQGPVGFPGPKGPPGPPGKDGLP 906
Query: 472 GGDGQRRSGGSWGETQSPEAG 492
G GQR G G+T P G
Sbjct: 907 GHPGQRGETGFQGKTGPPGPG 927
Score = 42.0 bits (97), Expect = 0.002
Identities = 83/370 (22%), Positives = 117/370 (31%), Gaps = 70/370 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL----CCAHPVRPAGHLACGA 195
P P G P P G RGP +G+ +G +G+ ++G PV P G
Sbjct: 1307 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366
Query: 196 GIWTRAQAGP-HKRAVGAAAGAAQSSGLFSKWVPCQP-LSQHPTGPEPSSRPHALSTAAS 253
R GP ++ + AAG G P P L P P +
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGP--PGLPGLKGDPGSKGEKGHPGLIGLIGP 1424
Query: 254 PRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
P + +G QG+ G D GIP G G + GPPG
Sbjct: 1425 P-----GEQGEKGDRGLPGTQGSPGAKGDGGIP----------GPAGPLGPPGPPG---- 1465
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
+PG G + + G G G PG PG PI + + R H
Sbjct: 1466 --LPGPQGPKG-----NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRH 1518
Query: 373 PKG----------NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCG 422
+G + S G FG L L Q + K P +
Sbjct: 1519 TEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHM--------KFPMGTQTNPARTCKD 1570
Query: 423 MRPLQGWSRSLLPKWPPATLWL------GDDLFTGSCHFPSSFGQRCLSPSIQTNG---G 473
++ P +P W+ D F C+F S G+ C+ P ++ G
Sbjct: 1571 LQLSH-------PDFPDGEYWIDPNQGCSGDSFKVYCNFTSG-GETCIYPDKKSEGVRIS 1622
Query: 474 DGQRRSGGSW 483
+ GSW
Sbjct: 1623 SWPKEKPGSW 1632
Score = 38.1 bits (87), Expect = 0.030
Identities = 68/230 (29%), Positives = 74/230 (32%), Gaps = 52/230 (22%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMP- 354
G G GPPG PG G R P + G G GPPGT
Sbjct: 406 GPAGPAGIMGPPGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPGPPGTMLMLPFRY 460
Query: 355 GAGGTHSP-----------------IAARG-------RYRSHPKGNCSPGSSPGFGELWP 390
G G+ P IA RG R P G PGSS GE
Sbjct: 461 GGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG--GPGSSGAKGESGD 518
Query: 391 LGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLF 449
G Q P QGP G GKP + RP R +P P A GD F
Sbjct: 519 PGPQGPRGVQGPPGPTGKPGKR-----------GRPGADGGRG-MPGEPGAK---GDRGF 563
Query: 450 TGSCHFPSS---FGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-EAGAQG 495
G P G+R G DG R G G P EAG +G
Sbjct: 564 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 613
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 54.7 bits (130), Expect = 3e-07
Identities = 82/271 (30%), Positives = 91/271 (33%), Gaps = 46/271 (16%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWR-GPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRA 201
PPG P P GL GP P+R G GS G + A + A I R
Sbjct: 473 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGS---KGPTISAQEAQAQAILQQARIALRG 529
Query: 202 QAGP-HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG----PEPSSRPHALSTAASPRP 256
GP G SSG +K P Q P G P P+ +P RP
Sbjct: 530 PPGPMGLTGRPGPVGGPGSSG--AKGESGDPGPQGPRGVQGPPGPTGKP-----GKRGRP 582
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G G A+G RG DG+P L G G QGPPG M
Sbjct: 583 GADGGRGMPGEPG---AKGDRG--FDGLPGLP----GDKGHRGERGPQGPPGPPGDDGMR 633
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGN 376
G G P R G+ G GP GT PG G P PKGN
Sbjct: 634 GEDGEIGP-----RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--------PGPKGN 680
Query: 377 CSPGSSPGFGELWPLGQQ---CPCVAQGPHG 404
P PG P GQQ P GP G
Sbjct: 681 MGPQGEPG-----PPGQQGNPGPQGLPGPQG 706
Score = 52.0 bits (123), Expect = 2e-06
Identities = 74/276 (26%), Positives = 89/276 (32%), Gaps = 50/276 (18%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P GL GP+ G +GPQG +GL A P GH
Sbjct: 689 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGAD--GPPGH------------ 734
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
P K GA G P GP P + A R G+
Sbjct: 735 --PGKEGQSGEKGALGPPG--------------PQGPIGYPGPRGVKGADGVRGLKGS-K 777
Query: 263 SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGP---PGTNPQC------ 313
+ G +G G D R + G G GP PG + Q
Sbjct: 778 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 837
Query: 314 ---AMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RY 369
+PG G + P + G G A G G PG G P RG R
Sbjct: 838 GVPGLPGYPGRQGP-----KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG 892
Query: 370 RSHPKGNCSP-GSSPGFGELWPLGQQCPCVAQGPHG 404
P G P G+S G G P G++ P QGP G
Sbjct: 893 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVG 928
Score = 52.0 bits (123), Expect = 2e-06
Identities = 72/282 (25%), Positives = 86/282 (30%), Gaps = 32/282 (11%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH-PVRPAGHLACGAG 196
Q P P G P G GP L G +GP G + G P PAG
Sbjct: 1050 QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGP 1109
Query: 197 IWTRAQAGP--------HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHAL 248
+ AGP K +G P P Q P G P
Sbjct: 1110 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG-----APGIA 1164
Query: 249 STAASPRPCWGAG-HSQTWRQGAGEAQGTRGG-SADGIPELTCYQRSKCGKCGTVPTQGP 306
P P G Q +GA G G G+P ++ + G G + GP
Sbjct: 1165 GGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG-PPGEKGENGDVGPMGPPGP 1223
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG GA G + P G G V +G PG PG G P R
Sbjct: 1224 PGPRGPQGPNGADGPQGP-----PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGER 1278
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G KG P + G P G + P GP G P
Sbjct: 1279 GE-----KGEAGPPGAAG-----PPGAKGPPGDDGPKGNPGP 1310
Score = 51.2 bits (121), Expect = 3e-06
Identities = 77/283 (27%), Positives = 92/283 (32%), Gaps = 45/283 (15%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSG-LCCAHPVRPAGHLACGAG 196
Q PQ P G P P G G L G RG G K+G V P G
Sbjct: 921 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 980
Query: 197 IWTRAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
I R G P ++ + AAG + G P G P L
Sbjct: 981 IGERGHPGPPGPPGEQGLPGAAGKEGAKG-----------DPGPQGISGKDGPAGLRGFP 1029
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTV------PTQGP 306
R GA QGA +G G P + +R G G + QGP
Sbjct: 1030 GERGLPGA-------QGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP 1082
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG + PG G + P G+ G G PG PG G I
Sbjct: 1083 PGPAGEKGAPGEKGPQGP--------AGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEP 1134
Query: 367 GRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG-GKP 408
G+ S KG+ PG P G Q P A G GG G+P
Sbjct: 1135 GQKGS--KGDKGENGPPG-----PPGLQGPVGAPGIAGGDGEP 1170
Score = 47.8 bits (112), Expect = 4e-05
Identities = 82/336 (24%), Positives = 104/336 (30%), Gaps = 58/336 (17%)
Query: 88 AWAGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGP 147
A GGP R E P G + G P GF PPG P
Sbjct: 1269 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFP-----GDPGPPGEP 1323
Query: 148 QRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHK 207
G+ G + G GP G ++G P P G + GP
Sbjct: 1324 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAG-----PPGPPG------------KRGP-P 1365
Query: 208 RAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE-PSSRPHALSTAASPRPCWGAGHSQTW 266
A GA + P P GP+ P+ +P P P
Sbjct: 1366 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP---------- 1415
Query: 267 RQGAGEAQGTRGGSA-DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI 325
GE QG G + DG P G G +G PG+ + PG G P
Sbjct: 1416 ---VGE-QGLPGAAGQDGPP-------GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP- 1463
Query: 326 ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH-PKGNCSPGSSPG 384
+ + G G QG PG + +PG G P G PKGN
Sbjct: 1464 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN-------- 1514
Query: 385 FGELWPLGQQCPCVAQGPHGG-GKPSQALAAGPTVS 419
G P GQ+ GP G G P + + P +S
Sbjct: 1515 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILS 1550
Score = 46.6 bits (109), Expect = 9e-05
Identities = 85/361 (23%), Positives = 99/361 (27%), Gaps = 84/361 (23%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P G GP G RGPQG G P P G + G+ + +
Sbjct: 1203 PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG-----PQGPPGSVGSVGGVGEKGEP 1257
Query: 204 G-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRP 256
G P + VG G G GP
Sbjct: 1258 GEAGNPGPPGEAGVGGPKGERGEKG--------------EAGPP---------------- 1287
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
GA G +G D P + G G GPPG
Sbjct: 1288 ------------GAAGPPGAKGPPGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQD 1329
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG-RYRSHPKG 375
G G + G+ G GPPG E PG G P A G R KG
Sbjct: 1330 GVGGDK-----------GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG 1378
Query: 376 NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRSLLP 435
+ G P G+ P QGP G P V G+ G P
Sbjct: 1379 AKGEAGAEG-----PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1433
Query: 436 KWPPATLWL-GDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEAGAQ 494
PP L GD G P G I G G++ G G SP A
Sbjct: 1434 MGPPGLPGLKGDPGSKGEKGHPGLIG------LIGPPGEQGEKGDRGLPGTQGSPGAKGD 1487
Query: 495 G 495
G
Sbjct: 1488 G 1488
Score = 44.3 bits (103), Expect = 4e-04
Identities = 97/381 (25%), Positives = 119/381 (31%), Gaps = 61/381 (16%)
Query: 138 QHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI 197
Q P PPG G GPR L G + GP+G L G A P +P G
Sbjct: 621 QGPPGPPGDDGMRGEDGEIGPRGLPGEA---GPRGLLGPRGTPGA-PGQP-GMAGVDGPP 675
Query: 198 WTRAQAGPH-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE----PSSRPHALSTAA 252
+ GP + G GL P Q P GP P +P
Sbjct: 676 GPKGNMGPQGEPGPPGQQGNPGPQGL--------PGPQGPIGPPGEKGPQGKPGLAGLPG 727
Query: 253 SPRPCWGAG-HSQTWRQGAGEAQGTRG----------GSADGIPELTCYQRSKCGKCGTV 301
+ P G Q+ +GA G +G ADG+ R G G
Sbjct: 728 ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV-------RGLKGSKGEK 780
Query: 302 PTQGPPGTNPQCAMPGASGTRSPIATR----RRSKCGKCGTVTAQGPPGTHAE------C 351
G PG + G G I R G+ G GP G E
Sbjct: 781 GEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 840
Query: 352 AMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQA 411
+PG G P + G + P N G+ G+ P GQ+ P +G G
Sbjct: 841 GLPGYPGRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRG------- 892
Query: 412 LAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTN 471
A GPT G +G S P PP G G FP G
Sbjct: 893 -ARGPT----GKPGPKGTSGGDGPPGPPGE--RGPQGPQGPVGFPGPKGPPGPPGKDGLP 945
Query: 472 GGDGQRRSGGSWGETQSPEAG 492
G GQR G G+T P G
Sbjct: 946 GHPGQRGETGFQGKTGPPGPG 966
Score = 42.0 bits (97), Expect = 0.002
Identities = 83/370 (22%), Positives = 117/370 (31%), Gaps = 70/370 (18%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL----CCAHPVRPAGHLACGA 195
P P G P P G RGP +G+ +G +G+ ++G PV P G
Sbjct: 1346 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405
Query: 196 GIWTRAQAGP-HKRAVGAAAGAAQSSGLFSKWVPCQP-LSQHPTGPEPSSRPHALSTAAS 253
R GP ++ + AAG G P P L P P +
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGP--PGLPGLKGDPGSKGEKGHPGLIGLIGP 1463
Query: 254 PRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQ 312
P + +G QG+ G D GIP G G + GPPG
Sbjct: 1464 P-----GEQGEKGDRGLPGTQGSPGAKGDGGIP----------GPAGPLGPPGPPG---- 1504
Query: 313 CAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
+PG G + + G G G PG PG PI + + R H
Sbjct: 1505 --LPGPQGPKG-----NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRH 1557
Query: 373 PKG----------NCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCG 422
+G + S G FG L L Q + K P +
Sbjct: 1558 TEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHM--------KFPMGTQTNPARTCKD 1609
Query: 423 MRPLQGWSRSLLPKWPPATLWL------GDDLFTGSCHFPSSFGQRCLSPSIQTNG---G 473
++ P +P W+ D F C+F S G+ C+ P ++ G
Sbjct: 1610 LQLSH-------PDFPDGEYWIDPNQGCSGDSFKVYCNFTSG-GETCIYPDKKSEGVRIS 1661
Query: 474 DGQRRSGGSW 483
+ GSW
Sbjct: 1662 SWPKEKPGSW 1671
Score = 38.1 bits (87), Expect = 0.030
Identities = 68/230 (29%), Positives = 74/230 (32%), Gaps = 52/230 (22%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMP- 354
G G GPPG PG G R P + G G GPPGT
Sbjct: 445 GPAGPAGIMGPPGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPGPPGTMLMLPFRY 499
Query: 355 GAGGTHSP-----------------IAARG-------RYRSHPKGNCSPGSSPGFGELWP 390
G G+ P IA RG R P G PGSS GE
Sbjct: 500 GGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVG--GPGSSGAKGESGD 557
Query: 391 LGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLF 449
G Q P QGP G GKP + RP R +P P A GD F
Sbjct: 558 PGPQGPRGVQGPPGPTGKPGKR-----------GRPGADGGRG-MPGEPGAK---GDRGF 602
Query: 450 TGSCHFPSS---FGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-EAGAQG 495
G P G+R G DG R G G P EAG +G
Sbjct: 603 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 652
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 54.3 bits (129), Expect = 4e-07
Identities = 89/336 (26%), Positives = 115/336 (34%), Gaps = 33/336 (9%)
Query: 123 GLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRG-----PQGSLCKS 177
GL T P G P P GG P P G + + SP G P+G+
Sbjct: 1139 GLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1198
Query: 178 GLCCAHPVRPAGHLACGA--GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQH 235
A P P G LA + G T A P G A + + + P P
Sbjct: 1199 A---ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG- 1254
Query: 236 PTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQ-----GTRGGSADGIPE---- 286
P P P P AA+P P G + +GA +GG A P+
Sbjct: 1255 PATPPPKGAP--TPPAATP-PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPT 1311
Query: 287 -LTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPP 345
S G GT P +G P T P P GT + AT SK G + +GP
Sbjct: 1312 PPAATPPSPKGSPGTPPPKGAP-TPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT 1370
Query: 346 GTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGG 405
A + G P RG PKG+ +SP L P ++ P G
Sbjct: 1371 PPAATPSHKGGPAMTPPSPKRGPAIPSPKGD---PTSPAVIPLSP--KKAPATPVTREGA 1425
Query: 406 GKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPAT 441
PS+ P V+ ++ S PK PAT
Sbjct: 1426 ATPSKGDLTPPAVTPVSLKKAPATS---APKGGPAT 1458
Score = 44.3 bits (103), Expect = 4e-04
Identities = 80/325 (24%), Positives = 103/325 (31%), Gaps = 34/325 (10%)
Query: 123 GLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC-- 180
G T P G P P GGP PSP G P +++ SP P + G
Sbjct: 976 GPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTP 1035
Query: 181 -CAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPT-- 237
A P P G A + A P G A S K P P + P+
Sbjct: 1036 PAATPPSPKGSPA-ATPLPKGAPTTPAATLPSPKGGPATPS---LKGAPTPPAATPPSPK 1091
Query: 238 -GP-EPSSRPHALSTAASPRPCWGA----GHSQTWRQGAGEAQGTRGGSADGIPE----- 286
GP PS + + AA+P G H A +GG A P+
Sbjct: 1092 GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT 1151
Query: 287 LTCYQRSKCGKCGTVPTQG--------PPGTNPQCAMPGASGTRSPIATRRRSKCGKCGT 338
S G T P +G PP A P G + A S G T
Sbjct: 1152 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT 1211
Query: 339 VTAQGPPGTHAECAMPGAGGTHSPI---AARGRYRSHPKGNCSPGSSPGFGELWPLGQQC 395
+ +G P T A GG +P A + P P + P G P
Sbjct: 1212 PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATP 1271
Query: 396 PCVAQG---PHGGGKPSQALAAGPT 417
P + G P G P+ A+ P+
Sbjct: 1272 PSLKGGLATPPHKGAPNPAVVTPPS 1296
Score = 40.0 bits (92), Expect = 0.008
Identities = 71/309 (22%), Positives = 96/309 (31%), Gaps = 42/309 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P P GGP PSP G P + + SP GP K P+ + A +
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFP 1029
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
+ + P + G+ ++ L K P P + T P P P S +P P
Sbjct: 1030 KGASTPPAATPPSPKGSPAATPL-PKGAPTTPAA---TLPSPKGGPATPSLKGAPTP--- 1082
Query: 260 AGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
A +GG A P+ P PP A P
Sbjct: 1083 ---------PAATPPSPKGGPATPSPK----------GAPMPPAATPPSPKGGLATPPHK 1123
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKG-NCS 378
G + A S G T +G P T A GG +P PKG +
Sbjct: 1124 GAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATP---------PPKGAPTT 1174
Query: 379 PGSSP-----GFGELWPLGQQCPCVAQGPH-GGGKPSQALAAGPTVSMCGMRPLQGWSRS 432
P ++P G P G A P GG + + PT +G +
Sbjct: 1175 PAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT 1234
Query: 433 LLPKWPPAT 441
PK P T
Sbjct: 1235 PSPKGAPTT 1243
Score = 36.2 bits (82), Expect = 0.12
Identities = 75/310 (24%), Positives = 97/310 (31%), Gaps = 27/310 (8%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC--CAHPVRPAGHLACGA--GIW 198
P G P PSP G P + + SP GP K A P P G A + G
Sbjct: 927 PKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP 986
Query: 199 TRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCW 258
T A P G A + + + P P P P + AA+P
Sbjct: 987 TPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGA--STPPAATPPSPK 1044
Query: 259 GAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
G+ + +GA S G P + + T P PP A P
Sbjct: 1045 GSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAP-----TPPAATPPSPKGGPATPSP 1099
Query: 319 SGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKG-NC 377
G P A S G T +G P T A GG +P PKG
Sbjct: 1100 KGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATP---------PPKGAPT 1150
Query: 378 SPGSSP-----GFGELWPLGQQCPCVAQGPH-GGGKPSQALAAGPTVSMCGMRPLQGWSR 431
+P ++P G P G A P GG + + PT +G
Sbjct: 1151 TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210
Query: 432 SLLPKWPPAT 441
+ PK P T
Sbjct: 1211 TPSPKGAPTT 1220
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 53.1 bits (126), Expect = 9e-07
Identities = 104/389 (26%), Positives = 122/389 (31%), Gaps = 82/389 (21%)
Query: 140 PQKPPG-----GPQRP----SPGGLR------GPRSLSGSSPWRGPQGSLCKSGLCCAHP 184
PQ PPG GPQ P PGG + GP+ L G GP G K G
Sbjct: 604 PQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPG-----E 658
Query: 185 VRPAGHLACGAGIWTRAQAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSS 243
P G + AG P +R AGA G P GPE
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRG-----------GAGPPGPEGGK 707
Query: 244 RPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPT 303
A P P AG G G RGG P+ + G G
Sbjct: 708 -----GAAGPPGPPGAAG-----TPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Query: 304 QGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPI 363
GP G PG +G P G G +G PG E PG G
Sbjct: 758 DGPRGPTGPIGPPGPAG--QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAG----- 810
Query: 364 AARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGM 423
+ P N PG G G+ P GP GG P AGP G
Sbjct: 811 -----FPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP-----AGPP----GP 856
Query: 424 RPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSW 483
+ ++G S P P G+ FP G R L +NG G GS
Sbjct: 857 QGVKGERGS--PGGP------------GAAGFP---GARGLPGPPGSNGNPGPPGPSGSP 899
Query: 484 GETQSPEAGAQGNHVFCVDFAISGGKEDS 512
G+ P G GN +SG K D+
Sbjct: 900 GKDGPP--GPAGNTGAPGSPGVSGPKGDA 926
Score = 52.0 bits (123), Expect = 2e-06
Identities = 76/282 (26%), Positives = 98/282 (34%), Gaps = 64/282 (22%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
P G P P P G G GS ++GP G ++G + P P G +
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAG--PSGPPGPPGAI---------GP 223
Query: 203 AGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGH 262
+GP AG SG P +P + GP P A P GH
Sbjct: 224 SGP--------AGKDGESGR-----PGRPGERGLPGP-----PGIKGPAGIPGFPGMKGH 265
Query: 263 ----SQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
+ +G A G +G +G+P + G G + +G PG + +PGA
Sbjct: 266 RGFDGRNGEKGETGAPGLKG--ENGLP-------GENGAPGPMGPRGAPGERGRPGLPGA 316
Query: 319 SGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCS 378
+G R R G G GPPGT PGA G P S
Sbjct: 317 AGARGNDGAR-----GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAG-------------S 358
Query: 379 PGSSPGFGELWPLGQQCPCVAQGPHG----GGKPSQALAAGP 416
PGS+ G+ G Q AQGP G G P GP
Sbjct: 359 PGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGP 400
Score = 51.6 bits (122), Expect = 3e-06
Identities = 98/365 (26%), Positives = 115/365 (31%), Gaps = 49/365 (13%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSG-------LCCAHPVRPAGHLACGAGI 197
G P P GL G G+ +RGP G G P P G A G
Sbjct: 468 GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRG--AAGEPG 525
Query: 198 WTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG----PEPSSRPHALSTAAS 253
GP R + + G S G P P SQ +G P PS
Sbjct: 526 RDGVPGGPGMRGMPGSPGGPGSDG-----KPGPPGSQGESGRPGPPGPSGPRGQPGVMGF 580
Query: 254 PRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQC 313
P P GA G RGG P+ GK G QGPPG
Sbjct: 581 PGP--------KGNDGAPGKNGERGGPGGPGPQ------GPPGKNGETGPQGPPGPTGPG 626
Query: 314 AMPGASGTRSPIATR-RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
G +G P + G G G PG + PGA G A G R
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE-RGP 685
Query: 373 PKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSRS 432
P +PG G G P G G G P AAG T + GM +G S
Sbjct: 686 PGLAGAPGLRGGAGPPGPEG--------GKGAAGPPGPPGAAG-TPGLQGMPGERGGLGS 736
Query: 433 LLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPE-A 491
PK G+ G+ P G R + I G GQ G G P A
Sbjct: 737 PGPKGDK-----GEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIA 791
Query: 492 GAQGN 496
G +G+
Sbjct: 792 GPRGS 796
Score = 51.2 bits (121), Expect = 3e-06
Identities = 76/298 (25%), Positives = 94/298 (31%), Gaps = 21/298 (7%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSG----LCCAHPVRPAGHLACGA 195
P P G P + P G G GS GP+G + G P G L
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG 951
Query: 196 GIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR 255
R AGP + Q S LS P P P TA P
Sbjct: 952 ITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Query: 256 PCWGAG-HSQTWRQGAGEAQGTRG-GSADGIPELTCY--QRSKCGKCGTVPTQGPPGTNP 311
G R G+ +G RG + G P + G G +G G
Sbjct: 1012 RDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 312 QCAMPGASGTR-SPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYR 370
PG +G+R +P R G+ G A G G PGA G+ P +G
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 371 S----HPKGNCSPGSSPG----FGELWPLGQQCPCVAQGPHGG----GKPSQALAAGP 416
S P+G P PG G P+G P +G G G P Q GP
Sbjct: 1132 SPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGP 1189
Score = 51.2 bits (121), Expect = 3e-06
Identities = 79/302 (26%), Positives = 99/302 (32%), Gaps = 32/302 (10%)
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
Q PPG P G+ G R L+G GP+GS G+ +P + G R
Sbjct: 938 QGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGV-KGESGKPGANGLSG----ER 992
Query: 201 AQAGPH--KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSS----RPHALSTAASP 254
GP G A + S +P + S G + P A P
Sbjct: 993 GPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Query: 255 RPCWGAGHS-------QTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPP 307
P AG S GA G+RG P + + G G +G P
Sbjct: 1053 GPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFP 1112
Query: 308 GTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG 367
G PG +G + I + G G V GPPG PG G P RG
Sbjct: 1113 GNPGAPGSPGPAGQQGAIGS--PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRG 1170
Query: 368 RYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPL 426
S SPG G+ P G P A GP GG + A+A G P
Sbjct: 1171 ERGSE--------GSPGHPGQPGPPG---PPGAPGPCCGGVGAAAIAGIGGEKAGGFAPY 1219
Query: 427 QG 428
G
Sbjct: 1220 YG 1221
Score = 46.2 bits (108), Expect = 1e-04
Identities = 85/342 (24%), Positives = 111/342 (32%), Gaps = 45/342 (13%)
Query: 90 AGGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQR 149
AG PG+ A+GE + G + G + +P Q P PPG
Sbjct: 341 AGFPGSPGAKGEVGPAGSPGSN---------GAPGQRGEPGPQGHAGAQGPPGPPGINGS 391
Query: 150 PSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAG----IWTRAQAGP 205
P G GP + G+ G +G +G A L GAG + + GP
Sbjct: 392 PGGKGEMGPAGIPGAPGLMGARGPPGPAG------ANGAPGLRGGAGEPGKNGAKGEPGP 445
Query: 206 H-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG--- 261
+R G + G K P P + P A +P AG
Sbjct: 446 RGERGEAGIPGVPGAKGEDGK-------DGSPGEPGANGLPGAAGERGAPGFRGPAGPNG 498
Query: 262 ----HSQTWRQGAGEAQGTRGGSA----DGIPELTCYQ--RSKCGKCGTVPTQGPPGTNP 311
+GA G RG + DG+P + G G+ GPPG+
Sbjct: 499 IPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQG 558
Query: 312 QCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRS 371
+ PG G P + G G G PG + E PG G P G
Sbjct: 559 ESGRPGPPGPSGP--RGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGP 616
Query: 372 H-PKGNCSPGSSPG-FGELWPLGQQCPCVAQGPHG-GGKPSQ 410
P G PG G G P G Q GP G GKP +
Sbjct: 617 QGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGE 658
Score = 45.4 bits (106), Expect = 2e-04
Identities = 75/264 (28%), Positives = 88/264 (33%), Gaps = 47/264 (17%)
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
Q PPG P + P G GP G S GP G +SG P RP G +
Sbjct: 200 QGPPGEPGQAGPSGPPGPPGAIGPS---GPAGKDGESG----RPGRP-GERGLPGPPGIK 251
Query: 201 AQAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-PEPSSRPHALSTAASPRPCW 258
AG P + G +G K P + G P + P + +P
Sbjct: 252 GPAGIPGFPGMKGHRGFDGRNG--EKGETGAPGLKGENGLPGENGAPGPMGPRGAP---- 305
Query: 259 GAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
+ R G A G RG DG G G GPPGT PGA
Sbjct: 306 ----GERGRPGLPGAAGARGN--DGAR----------GSDGQPGPPGPPGTAGFPGSPGA 349
Query: 319 SGTRSPI-------ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG---- 367
G P A +R + G G AQGPPG PG G P G
Sbjct: 350 KGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGL 409
Query: 368 ---RYRSHPKG-NCSPGSSPGFGE 387
R P G N +PG G GE
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGE 433
Score = 42.0 bits (97), Expect = 0.002
Identities = 62/225 (27%), Positives = 77/225 (34%), Gaps = 42/225 (18%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRS-------------KCGKCGTVTAQ 342
G G GPPGT+ PG+ G + P ++ G G
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233
Query: 343 GPPGTHAECAMPGAGGTHSPIAARG-----RYRSHPKGNCSPG--SSPGF-GELWPLGQQ 394
G PG E +PG G P G +R N G +PG GE G+
Sbjct: 234 GRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN 293
Query: 395 CPCVAQGPHGG----GKPSQALAAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFT 450
GP G G+P AAG G +G P PP T F
Sbjct: 294 GAPGPMGPRGAPGERGRPGLPGAAGAR----GNDGARGSDGQPGPPGPPGTAG-----FP 344
Query: 451 GSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSPEAGAQG 495
GS P + G+ + S +NG GQR G G AGAQG
Sbjct: 345 GS---PGAKGEVGPAGSPGSNGAPGQRGEPGPQG-----HAGAQG 381
Score = 32.0 bits (71), Expect = 2.2
Identities = 63/249 (25%), Positives = 81/249 (32%), Gaps = 61/249 (24%)
Query: 295 CGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSK----CGKCGTVTAQGPPGTHAE 350
C + T PT+ P G PQ G G P R+ G+ G+ + GPPG
Sbjct: 88 CPQPPTAPTRPPNGQGPQ----GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICES 143
Query: 351 C--------------------------AMPGAGGTHSPIAARGRYRSHPKGNCSPG--SS 382
C PG G P G HP SPG
Sbjct: 144 CPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT-SGHPGSPGSPGYQGP 202
Query: 383 PGF-GELWPLGQQCPCVAQGPHG----------GGKPSQALAAGPTVSMCGMRPLQGWSR 431
PG G+ P G P A GP G G+P + GP G++ G
Sbjct: 203 PGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP----GIKGPAG--- 255
Query: 432 SLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRRSGGSWGETQSP-- 489
+P +P G D G + G + + NG G G+ GE P
Sbjct: 256 --IPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGL 313
Query: 490 --EAGAQGN 496
AGA+GN
Sbjct: 314 PGAAGARGN 322
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 53.1 bits (126), Expect = 9e-07
Identities = 114/444 (25%), Positives = 145/444 (32%), Gaps = 69/444 (15%)
Query: 92 GPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPS 151
G G A+GE P + + E G P+G P PPG P P
Sbjct: 371 GAGEKGAKGE---PAVIEKGQQFEGPPGAPGPQGVVGPSG--------PPGPPGFPGDPG 419
Query: 152 PGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGI-WTRAQA-GPHKRA 209
P G G + G RGP G++ P + AG G + + +AQA ++
Sbjct: 420 PPGPAGLPGIPGIDGIRGPPGTVIMM------PFQFAGGSFKGPPVSFQQAQAQAVLQQT 473
Query: 210 VGAAAGAAQSSGLFSK----WVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQT 265
+ G GL + +P P + G E P L P G +
Sbjct: 474 QLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVG----KM 529
Query: 266 WRQGAGEAQGTRGGSA-------DGIPELT-----------CYQRSKCGKCGTVPTQGPP 307
R GA A+G G + DG+P L Q G+ G +GPP
Sbjct: 530 GRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPP 589
Query: 308 GTNPQCAMPGASG----TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPI 363
G Q PG G SP T R G G A+G G E PG G H
Sbjct: 590 GPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQ 649
Query: 364 AARGRY-------RSHPKGNCS-PGSSPGFGELWPLGQQCPC---VAQGPHGGGKPSQAL 412
G P GN PG G L G + P AQGP G P
Sbjct: 650 GLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYP 709
Query: 413 AAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNG 472
G R LQG P + GD G P + G R +G
Sbjct: 710 GPRGVKGTSGNRGLQGEKGEKGEDGFPG--FKGDVGLKGDQGKPGAPGPR------GEDG 761
Query: 473 GDGQRRSGGSWGETQSP-EAGAQG 495
+G + G GE P AG +G
Sbjct: 762 PEGPKGQAGQAGEEGPPGSAGEKG 785
Score = 50.1 bits (118), Expect = 8e-06
Identities = 76/303 (25%), Positives = 97/303 (32%), Gaps = 41/303 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVR-PAGHLACGAGIW 198
P P G P P G G + G+ +G +G +G +R PAGH
Sbjct: 1059 PLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADG 1118
Query: 199 TRAQAGPH-------KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTA 251
+ + GP V G GL + +P P + G S PH
Sbjct: 1119 AQGRRGPPGLFGQKGDDGVRGFVGVIGPPGL--QGLPGPPGEKGEVGDVGSMGPHGAPGP 1176
Query: 252 ASPRPCWGAGHSQTWRQGAGEA-----QGTRGGSAD-------GIPELTCYQRSKCGKCG 299
P+ G+ + G G+ +G RG + D GIP K G G
Sbjct: 1177 RGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEK-GDSG 1235
Query: 300 TVPTQGPPGTNPQCAMPGASGTRSPIATR----------------RRSKCGKCGTVTAQG 343
GPPG GA G+ P + G G V G
Sbjct: 1236 PSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG 1295
Query: 344 PPGTHAECAMPGAGGTHSPIAARGRY-RSHPKG-NCSPGSSPGFGELWPLGQQCPCVAQG 401
PPG E PG G P GR R KG PG G P+G + P G
Sbjct: 1296 PPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVG 1355
Query: 402 PHG 404
P G
Sbjct: 1356 PEG 1358
Score = 46.2 bits (108), Expect = 1e-04
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 274 QGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRS-K 332
+G G + + P + ++ K G G G PG PG G PI + +S K
Sbjct: 766 KGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLG---PIGEKGKSGK 822
Query: 333 CGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGF-GELWPL 391
G+ G +GPPG+ E PGA G + PKG+ +PG GE
Sbjct: 823 TGQPGLEGERGPPGSRGERGQPGATG-----------QPGPKGDVGQDGAPGIPGEKGLP 871
Query: 392 GQQCPCVAQGPHG 404
G Q P GP G
Sbjct: 872 GLQGPPGFPGPKG 884
Score = 45.1 bits (105), Expect = 2e-04
Identities = 73/290 (25%), Positives = 92/290 (31%), Gaps = 60/290 (20%)
Query: 141 QKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTR 200
Q PPG P P G +G G RG G ++G P PAG L
Sbjct: 874 QGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTG-----PPGPAGVLGPQG---KT 925
Query: 201 AQAGP-HKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
+ GP +R G GL P R A P P
Sbjct: 926 GEVGPLGERGPPGPPGPPGEQGL----------------PGLEGREGAKGELGPPGPLGK 969
Query: 260 AGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSK-----CGKCGTVPTQGPPGTNPQCA 314
G + G G +GG D P T + K G G+ +GP G
Sbjct: 970 EGPA-----GLRGFPGPKGGPGD--PGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIG 1022
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG------- 367
+PG SG+ P+ GK G+ +GPPG + +PG G P A G
Sbjct: 1023 LPGQSGSEGPV-----GPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGD 1077
Query: 368 ---------RYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
+ KG+ P PG P G P A G G P
Sbjct: 1078 KGDVGAPGHKGSKGDKGDAGPPGQPGI--RGPAGHPGPPGADGAQGRRGP 1125
Score = 43.1 bits (100), Expect = 0.001
Identities = 75/282 (26%), Positives = 88/282 (31%), Gaps = 35/282 (12%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV-RPAGHLACGAGIWTRA 201
PPG P P GL G G+ GP G L K G P G +
Sbjct: 936 PPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKG 995
Query: 202 QAGPHKRAVGAAAGAAQSSGLFSK---WVPCQPLSQHPTGP--EPSSR-----PHALSTA 251
GP VGA + L +P Q S+ P GP + SR P
Sbjct: 996 DKGP-PGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKD 1054
Query: 252 ASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTN 310
P P G GA G G D G P + G G G PG
Sbjct: 1055 GIPGPLGPLG-----PPGAAGPSGEEGDKGDVGAPG----HKGSKGDKGDAGPPGQPGIR 1105
Query: 311 PQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYR 370
PG G A RR G G G G PG G P +G
Sbjct: 1106 GPAGHPGPPGADG--AQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVG 1163
Query: 371 SHPKGNCSPGSSPGFGELWPLGQQCPCVAQG----PHGGGKP 408
G+ P +PG P G Q P ++G P G G+P
Sbjct: 1164 D--VGSMGPHGAPG-----PRGPQGPTGSEGTPGLPGGVGQP 1198
Score = 42.7 bits (99), Expect = 0.001
Identities = 81/322 (25%), Positives = 103/322 (31%), Gaps = 76/322 (23%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
G PG GE P GR+ G + +G L PAG P GGP P
Sbjct: 935 GPPGPPGPPGEQGLPGLEGRE-GAKGELGPPGPLGKEGPAGLRGFPG-----PKGGPGDP 988
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRAV 210
P GL+G + G G GS + G P+ PAG + + GP
Sbjct: 989 GPTGLKGDKGPPGPV---GANGSPGERG-----PLGPAGGIGLPGQSGSEGPVGP----- 1035
Query: 211 GAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSR-PHALSTAASPRPCWGAGHS-QTWRQ 268
AG S G + P GP P L P +G
Sbjct: 1036 ---AGKKGSRG-----------ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDV 1081
Query: 269 GAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIAT- 327
GA +G++G D P + G G GPPG + GA G R P
Sbjct: 1082 GAPGHKGSKGDKGDAGPP------GQPGIRGPAGHPGPPGAD------GAQGRRGPPGLF 1129
Query: 328 RRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGE 387
++ G G V GPPG +PG G GE
Sbjct: 1130 GQKGDDGVRGFVGVIGPPGLQG---LPGPPGEK-------------------------GE 1161
Query: 388 LWPLGQQCPCVAQGPHGGGKPS 409
+ +G P A GP G P+
Sbjct: 1162 VGDVGSMGPHGAPGPRGPQGPT 1183
Score = 42.7 bits (99), Expect = 0.001
Identities = 73/286 (25%), Positives = 89/286 (31%), Gaps = 54/286 (18%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P P G G + SG S GP G K G P G +
Sbjct: 1215 PPGAPGIPGPKGDIGEKGDSGPSGAAGPPG---KKG--------PPGEDGAKGSVGPTGL 1263
Query: 203 AG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCW 258
G P V G+ G P GP P A +P P
Sbjct: 1264 PGDLGPPGDPGVSGIDGSPGEKG--------DPGDVGGPGP-----PGASGEPGAPGPPG 1310
Query: 259 GAGHS-QTWRQGAGEAQGTRGGSA-DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G S R+G +G +G DG P G+ G + +GPPG +
Sbjct: 1311 KRGPSGHMGREGREGEKGAKGEPGPDGPP----------GRTGPMGARGPPG---RVGPE 1357
Query: 317 GASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY----RSH 372
G G P+ + G G GPPG +PG G P +G
Sbjct: 1358 GLRGIPGPVG-----EPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIG 1412
Query: 373 PKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
P G G G P G + GP G G P AGP
Sbjct: 1413 PPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGP 1458
Score = 42.0 bits (97), Expect = 0.002
Identities = 75/280 (26%), Positives = 92/280 (32%), Gaps = 47/280 (16%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P RP P G G G +G G + GL P G Q
Sbjct: 793 PGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGL--EGERGPPGSRGERGQPGATGQP 850
Query: 204 GPHKRAVG--AAAGAAQSSGLFSKWVPCQPLSQHPTG-PEPSSRPHALSTAASPRPCWGA 260
GP K VG A G GL P Q P G P P P P
Sbjct: 851 GP-KGDVGQDGAPGIPGEKGL--------PGLQGPPGFPGPKGPPGHQGKDGRP------ 895
Query: 261 GHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQ---GPPGTNPQCAMPG 317
GH G G +G + P + K G+ G + + GPPG + +PG
Sbjct: 896 GH-----PGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPG 950
Query: 318 ASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNC 377
G + + G G + +GP G G G P +G P G
Sbjct: 951 LEGREG-----AKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKG--DKGPPGPV 1003
Query: 378 SPGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
SP GE PL GP GG G P Q+ + GP
Sbjct: 1004 GANGSP--GERGPL---------GPAGGIGLPGQSGSEGP 1032
Score = 38.1 bits (87), Expect = 0.030
Identities = 67/260 (25%), Positives = 81/260 (31%), Gaps = 60/260 (23%)
Query: 91 GGPGNWRAEGETEAPLTVGRDSGLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRP 150
GGPG A GE AP G+ G +G R + P PPG R
Sbjct: 1292 GGPGPPGASGEPGAPGPPGK-RGPSGHMG-----REGREGEKGAKGEPGPDGPPG---RT 1342
Query: 151 SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRAV 210
P G RGP G RG G + + GL + Q GP
Sbjct: 1343 GPMGARGPPGRVGPEGLRGIPGPVGEPGL-----------------LGAPGQMGP----- 1380
Query: 211 GAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGA 270
G SGL P + TGP+ L P G + QG
Sbjct: 1381 ---PGPLGPSGL--------PGLKGDTGPKGEKGHIGLIGLIGPPGEAG----EKGDQGL 1425
Query: 271 GEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRR 330
QG G D P G G++ GPPG G+ G+ + R
Sbjct: 1426 PGVQGPPGPKGDPGPP---------GPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPR-- 1474
Query: 331 SKCGKCGTVTAQGPPGTHAE 350
G G GPPG AE
Sbjct: 1475 ---GDTGPAGPPGPPGAPAE 1491
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 53.1 bits (126), Expect = 9e-07
Identities = 83/294 (28%), Positives = 99/294 (33%), Gaps = 33/294 (11%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
PQ PPG P P G G L G +G +G + GL P +P G
Sbjct: 570 PQGPPG---LPGPPGRVGAPGLQGERGEKGTRGEKGERGL-DGFPGKP-GDTGQQGRPGP 624
Query: 200 RAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
AGP + G A G+ V + L P P A + P
Sbjct: 625 SGVAGP--QGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGP 682
Query: 260 AGHSQTWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
G R G QG RG D GIP L Q G G GPPG +
Sbjct: 683 EG-----RDGPPGLQGLRGKKGDMGPPGIPGLLGLQ----GPPGPPGVPGPPGPGGSPGL 733
Query: 316 PGASG-TRSPIATRRRSKCGKCGTVTAQGPPGT------HAECAMPGAGGTHSPIAARG- 367
PG G P GK G GPPGT E +PG G I +G
Sbjct: 734 PGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGL 793
Query: 368 RYRSHPKGNCSPGSSPGF----GELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
R KG +PGF GE G++ G G G+ +A AGP
Sbjct: 794 AGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGP 847
Score = 47.8 bits (112), Expect = 4e-05
Identities = 74/279 (26%), Positives = 98/279 (35%), Gaps = 34/279 (12%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG P P G +G + + G G +G ++G P G L GI
Sbjct: 1118 PPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAG--------PPG-LPGPPGI----- 1163
Query: 203 AGPH-KRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAG 261
AGP + A G G + P P P G ++ AA P G+
Sbjct: 1164 AGPQGSQGERGADGEVGQKG--DQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGS- 1220
Query: 262 HSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGT 321
++G QG G GIP + K G+ G G PG + +PG G
Sbjct: 1221 ---PGKEGPPGPQGPSG--LPGIPG----EEGKEGRDGKPGPPGEPGKAGEPGLPGPEGA 1271
Query: 322 RSPIATR-RRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY--RSHPKGNCS 378
R P + G G G G + +PG G P +G R P N S
Sbjct: 1272 RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGS 1331
Query: 379 PGSSPGFGELWPLGQQCPCVAQGPHGG-GKPSQALAAGP 416
PGS GE P G ++G +G G P GP
Sbjct: 1332 PGSP---GEPGPSGTPGQKGSKGENGSPGLPGFLGPRGP 1367
Score = 46.6 bits (109), Expect = 9e-05
Identities = 93/344 (27%), Positives = 120/344 (34%), Gaps = 47/344 (13%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLC--CAHPVRPAGHLACGAGI 197
P PG P P G +G R G +G QG G +P P GA
Sbjct: 1154 PPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAG 1213
Query: 198 WTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-PEPSSRPHALSTAASPRP 256
Q P K G + G +P + + G P P P P P
Sbjct: 1214 PPGIQGSPGKEGPPGPQGPSGLPG-----IPGEEGKEGRDGKPGPPGEPGKAGEPGLPGP 1268
Query: 257 CWGAGHSQTWRQGAGE--AQGTRGGS-ADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQC 313
GA ++ G+ A G RG S A G+P Q GK G GP G
Sbjct: 1269 -EGARGPPGFKGHTGDSGAPGPRGESGAMGLPG----QEGLPGKDGDTGPTGPQGPQGPR 1323
Query: 314 AMPGASGT-RSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSH 372
PG +G+ SP + G GT +G G + +PG G P G +
Sbjct: 1324 GPPGKNGSPGSP------GEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGE-KGV 1376
Query: 373 PKGNCSPG--SSPGF-GELWPLGQQCPCVAQGPHGG-GKPSQALAAGPT--VSMCGMRPL 426
P PG PGF GE G + +GP GG G+P G + G + L
Sbjct: 1377 PGKEGVPGKPGEPGFKGERGDPGIKGD---KGPPGGKGQPGDPGIPGHKGHTGLMGPQGL 1433
Query: 427 QGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQT 470
G + + P PP G FP G R SPS++T
Sbjct: 1434 PGENGPVGPPGPP-----------GQPGFP---GLRGESPSMET 1463
Score = 43.5 bits (101), Expect = 7e-04
Identities = 97/389 (24%), Positives = 123/389 (31%), Gaps = 82/389 (21%)
Query: 134 LLAWQHPQKPPGGPQRPSPG---GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGH 190
LL Q P PPG P P PG GL G G GP G K G P P G
Sbjct: 709 LLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDG-----PNGPPGP 763
Query: 191 LACGAGIWTRAQAG-PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALS 249
R + G P K + G +G RP
Sbjct: 764 PGTKGEPGERGEDGLPGKPGLRGEIGEQGLAG----------------------RPGEKG 801
Query: 250 TAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-------GIPELTCYQRSKCGKCGTVP 302
A P GA G RG D G+P L R + G+ G
Sbjct: 802 EAGLP--------------GAPGFPGVRGEKGDQGEKGELGLPGLK-GDRGEKGEAGPAG 846
Query: 303 TQGPPGT----NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGG 358
G PGT P MPG G + G+ G G PG G G
Sbjct: 847 PPGLPGTTSLFTPHPRMPGEQGPK-----------GEKGDPGLPGEPGLQGRPGELGPQG 895
Query: 359 THSPIAARGRYRSH--PKGNCSPGSSPGFGELWPLGQQCPCVAQG----PHGGGKPSQAL 412
P A+G+ +H P +PG+ G P G A G P G+ +
Sbjct: 896 PTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKG 955
Query: 413 AAGPTVSMCGMRPLQGWSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTN- 471
AAG S + P LP PP G+ GS P G + ++ +
Sbjct: 956 AAGEEGSPGPVGPRGDPGAPGLP-GPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSE 1014
Query: 472 ----GGDGQRRSGGSWGETQSPEAGAQGN 496
GG + G+ G SP G++G+
Sbjct: 1015 NCALGGQCVKGDRGAPGIPGSP--GSRGD 1041
Score = 39.7 bits (91), Expect = 0.010
Identities = 73/276 (26%), Positives = 93/276 (33%), Gaps = 43/276 (15%)
Query: 154 GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAGPHKRAVGAA 213
GL+G R G + GP G + L HP P + GP +
Sbjct: 831 GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPG-------------EQGP--KGEKGD 875
Query: 214 AGAAQSSGLFSKWVPCQPLSQHPTGPEPSS-------RPHALSTAASPRPCWGAGHSQTW 266
G GL + P + Q PTGP + P A +P G S
Sbjct: 876 PGLPGEPGLQGR--PGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGP- 932
Query: 267 RQGAGEAQGTRGGSA-DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPI 325
G+ A G RG DG +R + G G + GP G PGA G P
Sbjct: 933 -PGSVGAPGLRGTPGKDG-------ERGEKGAAGEEGSPGPVGPRGD---PGAPGLPGPP 981
Query: 326 ATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR--GRYRSHPKGNCSPGS-- 381
+ + G G+ GP GT A C G + + + R P SPGS
Sbjct: 982 GKGKDGEPGLRGSPGLPGPLGTKAACGKV-RGSENCALGGQCVKGDRGAPGIPGSPGSRG 1040
Query: 382 SPGFGELWPLGQQCPCVAQG-PHGGGKPSQALAAGP 416
PG G P G P +G P G P GP
Sbjct: 1041 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGP 1076
Score = 31.6 bits (70), Expect = 2.8
Identities = 48/195 (24%), Positives = 63/195 (32%), Gaps = 34/195 (17%)
Query: 239 PEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKC 298
P P A+ +P P G G GE +G +G G+P G+
Sbjct: 495 PGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGE-KGEKGSL--GLP-------GPPGRD 544
Query: 299 GTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGG 358
G+ +G PG + +PG G R P QGPPG GA G
Sbjct: 545 GSKGMRGEPGELGEPGLPGEVGMRGP-----------------QGPPGLPGPPGRVGAPG 587
Query: 359 THSPIAARGRYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHGG----GKPSQALA 413
+G KG PG G+ G+ P GP G G
Sbjct: 588 LQGERGEKG--TRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGV 645
Query: 414 AGPTVSMCGMRPLQG 428
G V G++ QG
Sbjct: 646 PGSVVQQEGLKGEQG 660
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAG 189
P G P RP GGL GP G RG +G G+ + P G
Sbjct: 1516 PMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPG 1562
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 52.8 bits (125), Expect = 1e-06
Identities = 73/297 (24%), Positives = 92/297 (30%), Gaps = 61/297 (20%)
Query: 140 PQKPPGGPQRPS-----------------PGGLRGPRSLSGSSPWRGPQGSLCKSGLCCA 182
P PPG P RP P G++GP L G G +G L G
Sbjct: 150 PPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPG---- 205
Query: 183 HPVRPAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPS 242
H +P GA P + + G A GP+
Sbjct: 206 HQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMA--------------------GPKGE 245
Query: 243 SRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVP 302
+ PH G + R G A G +G +G P + R G G
Sbjct: 246 TGPHGYKGMVGAIGATGPPGEEGPRGPPGRA-GEKGD--EGSPGI----RGPQGITGPKG 298
Query: 303 TQGPPGTNPQCAMPGASGTRS-------PIATRRRSKCGKCGTVTAQGPPGTHAECAMPG 355
GPPG N + PG G + P + + G G +G PG E G
Sbjct: 299 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQG 358
Query: 356 AGGTHSPIAARGRYRSHPKGNCSP----GSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G P G P+G P G GE P+GQ P QGP G P
Sbjct: 359 LPGFSGPPGKEGE--PGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGP 413
Score = 42.4 bits (98), Expect = 0.002
Identities = 95/367 (25%), Positives = 115/367 (31%), Gaps = 53/367 (14%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P G+ G G + GP+G K+G P P G
Sbjct: 34 PPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGEPGKAG-----PDGPDGKPGIDGLTGA 88
Query: 200 RAQAGPHK-RAVGAAAGAAQSSGLFSKWVPCQPLSQHPTG-------PEPSSRPHALSTA 251
+ + GP V G GL P P G P P +
Sbjct: 89 KGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPS 148
Query: 252 ASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNP 311
P P G G QG GSAD + C K G G +G G
Sbjct: 149 GPPGPPGKPGR-------PGTIQGLE-GSADFLCPTNCPPGMK-GPPGLQGVKGHAGKRG 199
Query: 312 QCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRS 371
PG G P + G G GPPG PG G
Sbjct: 200 ILGDPGHQGKPGP-----KGDVGASGEQGIPGPPGPQGIRGYPGMAG------------- 241
Query: 372 HPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPLQGWSR 431
PKG P G + +G P +GP G P +A G S G+R QG +
Sbjct: 242 -PKGETGPHGYKGM--VGAIGATGPPGEEGPR--GPPGRAGEKGDEGSP-GIRGPQGITG 295
Query: 432 SLLPKWPPATLWLGDDLFTGSCHFPSSFGQ--RCLSPSIQTNGG-DGQRRSGGSWGETQS 488
PP G D G+ S GQ + SP Q G GQ + G G+
Sbjct: 296 PKGATGPPGI--NGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGE 353
Query: 489 PEAGAQG 495
P G QG
Sbjct: 354 P--GPQG 358
Score = 42.0 bits (97), Expect = 0.002
Identities = 65/256 (25%), Positives = 84/256 (32%), Gaps = 53/256 (20%)
Query: 140 PQKPPG-GPQRPSPG--GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAG 196
P+ PPG ++ G G+RGP+ ++G GP G K G P P + G
Sbjct: 269 PRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGT----PGTPGMKGSAG-- 322
Query: 197 IWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRP 256
QAG G+ GL VP QP ++ G + P L + P
Sbjct: 323 -----QAGQ--------PGSPGHQGLAG--VPGQPGTKGGPGDQGEPGPQGLPGFSGPPG 367
Query: 257 CWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMP 316
G + +G QG G D Q G+ G QGPPG +P
Sbjct: 368 KEG----EPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLP 423
Query: 317 GASGTR-SPIATRRRSKCGKCGTVTAQGP------------------------PGTHAEC 351
G G + SP T R K G G G PG +
Sbjct: 424 GVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDA 483
Query: 352 AMPGAGGTHSPIAARG 367
PG G P RG
Sbjct: 484 GAPGVQGYPGPPGPRG 499
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 52.0 bits (123), Expect = 2e-06
Identities = 100/381 (26%), Positives = 123/381 (32%), Gaps = 55/381 (14%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAH----PVRPAGHLACGAGIWTR 200
G P R GL GP+ GS +G +G G + P P G+ G I +
Sbjct: 559 GSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPAGP-IGDK 617
Query: 201 AQAGPHKRAVGAAAGAAQSSGLFSKWVP------CQPLSQHPTGPEPSSRPHALSTAASP 254
QAG + G G K VP + L P P P T
Sbjct: 618 GQAG--FPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPG-- 673
Query: 255 RPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCA 314
RP + G G DG+P G G T G PG N
Sbjct: 674 RPGLPGEKGAVGQPGIGFPGPPGPKGVDGLP----------GDMGPPGTPGRPGFNGLPG 723
Query: 315 MPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG--RYRSH 372
PG G + G G G PG +PG G H I G R
Sbjct: 724 NPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGE 783
Query: 373 PKGNCSPGS--SPGFGELWPLGQQCPCVAQGPHG-----GGKPSQALAAGPTVSMCGMRP 425
P PGS SPG + P G + P QGP G G K + P + M G +
Sbjct: 784 PGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKG 843
Query: 426 LQG-------WSRSLLPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQRR 478
+G +S LP P G G FP S G+ + G GQ
Sbjct: 844 DKGAQGLPGITGQSGLPGLP------GQQGAPGIPGFPGSKGE------MGVMGTPGQPG 891
Query: 479 SGGSWGETQSPEAGAQGNHVF 499
S G G P G +G+H F
Sbjct: 892 SPGPVGAPGLP--GEKGDHGF 910
Score = 44.7 bits (104), Expect = 3e-04
Identities = 72/269 (26%), Positives = 88/269 (32%), Gaps = 27/269 (10%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGL--CCAHPVRPAGHLACGAGIWTR 200
PPG P P G +G R G G G+ GL P GH+ G+ +
Sbjct: 116 PPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVP---GMLLK 172
Query: 201 AQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGA 260
+ G G GL P Q P GP + P P P
Sbjct: 173 GERG-----FPGIPGTPGPPGL--------PGLQGPVGPPGFTGPPG--PPGPPGPPGEK 217
Query: 261 GHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGAS 319
G QG +G +G S G+P Q G T +G G MPG
Sbjct: 218 GQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEK--GDFATKGEKGQKGEPGFQGMPGVG 275
Query: 320 GTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSP 379
P R K GK G +G PG E PG G P +G + P G P
Sbjct: 276 EKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKG--EAGPPG--PP 331
Query: 380 GSSPGFGELWPLGQQCPCVAQGPHGGGKP 408
G G G L G++ GP G P
Sbjct: 332 GIVIGTGPLGEKGERGYPGTPGPRGEPGP 360
Score = 41.2 bits (95), Expect = 0.004
Identities = 74/310 (23%), Positives = 100/310 (32%), Gaps = 47/310 (15%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQA 203
PG P P P G G L G+ +G G G P P A G + QA
Sbjct: 1001 PGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQG----SPGLPGDKGAKG----EKGQA 1052
Query: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASP-RPCWGAGH 262
GP + G G ++ P P ++ P P
Sbjct: 1053 GPPGIGIPGLRGEKGDQG----------IAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSP 1102
Query: 263 SQTWRQGAGEAQGTRGGSA----DGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGA 318
G+ G +G DGIP + G+ G T GP G Q PG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVK-------GEAGLPGTPGPTGPAGQKGEPGS 1155
Query: 319 SGTRSPIATRRRSKC---GKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGR--YRSHP 373
G + G G A+G G+ E PG G+ ++G + P
Sbjct: 1156 DGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPP 1215
Query: 374 KGNCSPG--SSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPTVSMCGMRPLQGWS 430
PG SPG P G +GP G G P GP + G+ ++G
Sbjct: 1216 GPQGQPGLPGSPGHATEGPKGD------RGPQGQPGLPGLPGPMGPP-GLPGIDGVKGDK 1268
Query: 431 RSLLPKWPPA 440
+ P WP A
Sbjct: 1269 GN--PGWPGA 1276
Score = 38.1 bits (87), Expect = 0.030
Identities = 49/182 (26%), Positives = 62/182 (34%), Gaps = 27/182 (14%)
Query: 249 STAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPG 308
S AA+ C G+G + G +G RG G+ + + G G QGPPG
Sbjct: 23 SRAAAKGGCAGSGCGKCDCHGVKGQKGERG--LPGLQGVIGFP----GMQGPEGPQGPPG 76
Query: 309 TNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARG- 367
PG GT+ G G A G PG +PG G P G
Sbjct: 77 QKGDTGEPGLPGTK-----------GTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGC 125
Query: 368 RYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGPHGGGKPSQALAAGPTVSMCGMRPL 426
+G P PGF G P G P G P + L P + + G R
Sbjct: 126 NGTKGERGPLGPPGLPGFAGNPGPPGL--------PGMKGDPGEILGHVPGMLLKGERGF 177
Query: 427 QG 428
G
Sbjct: 178 PG 179
Score = 36.2 bits (82), Expect = 0.12
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 292 RSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRS-KCGKCGTVTAQGPPGTHAE 350
R K GK G +G PG + PG G + P + + G G V GP G E
Sbjct: 286 RGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGE 345
Query: 351 CAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGF-GELWPLGQQCPCVAQGP 402
PG G P+G P PG G+ P G P A P
Sbjct: 346 RGYPGTPG--------------PRGEPGPKGFPGLPGQPGPPGLPVPGQAGAP 384
Score = 35.8 bits (81), Expect = 0.15
Identities = 96/378 (25%), Positives = 125/378 (33%), Gaps = 39/378 (10%)
Query: 143 PPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQ 202
PPG R PGG +GP LSG +G +G GL P G
Sbjct: 803 PPGA--RGPPGG-QGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGL 859
Query: 203 AG-PHKRAVGAAAGAAQSSGLFSKW-VPCQPLSQHPTGPE--PSSR-PHALSTAASPRPC 257
G P ++ G S G P QP S P G P + H ++ PR
Sbjct: 860 PGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGD 919
Query: 258 WGA-------------GHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQ 304
G G G+ + Q G I + + G G T
Sbjct: 920 PGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPI-----GEKGSRGDPGTP 974
Query: 305 GPPGTNPQCAMPGASGTRSPIATRRRSKC----GKCGTVTAQGPPGTHAECAMPGAGGTH 360
G PG + Q PG G + G G+V G PGT E +PG G
Sbjct: 975 GVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQ 1034
Query: 361 -SPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQ-CPCVAQGPHGGGKPSQALAAGPTV 418
SP + KG P PG G G++ +A P G+ + + G
Sbjct: 1035 GSPGLPGDKGAKGEKGQAGP---PGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIG-IP 1090
Query: 419 SMCGMRPLQGWSRSL-LPKWPPATLWLGDDLFTGSCHFPSSFGQRCLSPSIQTNGGDGQR 477
M G L+G S+ P P GD G P G+ L + G GQ+
Sbjct: 1091 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQK 1150
Query: 478 RSGGSWGETQSPEAGAQG 495
GS G S AG +G
Sbjct: 1151 GEPGSDGIPGS--AGEKG 1166
Score = 35.0 bits (79), Expect = 0.26
Identities = 63/239 (26%), Positives = 75/239 (31%), Gaps = 38/239 (15%)
Query: 144 PGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVR-------PAGHLACGAG 196
PG P P G +GP+ G + GP G + +G R P G
Sbjct: 304 PGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGF 363
Query: 197 IWTRAQAGPHKRAVGAAAGAAQSSG----LFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
Q GP V AGA G + P L P PS R
Sbjct: 364 PGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSL------PGPSGRDGLPGPPG 417
Query: 253 SPRPCWGAGHSQ---TWRQGAGEAQGTRG--GSADGIPEL--------TCYQRSKCGKCG 299
SP P G++ + G QG G G I E+ +C G G
Sbjct: 418 SPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRG 477
Query: 300 TVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGG 358
QGPPG PGA G R G+ G GP GT PGA G
Sbjct: 478 PPGPQGPPGEIGFPGQPGAKGDRG--------LPGRDGVAGVPGPQGTPGLIGQPGAKG 528
Score = 35.0 bits (79), Expect = 0.26
Identities = 74/288 (25%), Positives = 100/288 (34%), Gaps = 39/288 (13%)
Query: 141 QKPPGGPQRPSPGGLRGPRS------LSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACG 194
+K GP GLRG + GS +G +GS+ G+ P P + G
Sbjct: 1048 EKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGM----PGSPGLKGSPG 1103
Query: 195 AGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGP-----EPSSRPHALS 249
+ + + P ++ G G+ K P + PTGP EP S S
Sbjct: 1104 SVGYPGSPGLPGEKGDKGLPGLDGIPGV--KGEAGLPGTPGPTGPAGQKGEPGSDGIPGS 1161
Query: 250 TAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELTCYQRSKCGKCGTVPTQGPPG 308
P G G A+G +G + G P L G G GPPG
Sbjct: 1162 AGEKGEP----GLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIP-GSKGEQGFMGPPG 1216
Query: 309 TNPQCAMPGASG--TRSPIATR-RRSKCGKCGTVTAQGPP---------GTHAECAMPGA 356
Q +PG+ G T P R + + G G GPP G PGA
Sbjct: 1217 PQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDGVKGDKGNPGWPGA 1276
Query: 357 GGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG 404
G P G ++ P SPG + G++ P G QGP G
Sbjct: 1277 PGVPGPKGDPG-FQGMPGIGGSPGITGSKGDMGPPGVP---GFQGPKG 1320
Score = 34.7 bits (78), Expect = 0.34
Identities = 80/318 (25%), Positives = 106/318 (33%), Gaps = 60/318 (18%)
Query: 91 GGPGNWRAEGETEAPLTVGRDS--GLEAGVGV-GCGLRTAQ-PAGFELLAWQHPQKPPGG 146
G PG +G+ P T GR G + VG G G P G + L PPG
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGD--MGPPGT 712
Query: 147 PQRP-------SPG-------------GLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVR 186
P RP +PG GL+G L G G +GS+ G+
Sbjct: 713 PGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV------- 765
Query: 187 PAGHLACGAGIWTRAQAGPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPH 246
P H A G + P + + G+ G+ P Q P P S P
Sbjct: 766 PGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGP--PGLSGPPG 823
Query: 247 ALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGP 306
P G G +G +G A G+P +T + G G QG
Sbjct: 824 IKGEKGFP------GFPGLDMPG---PKGDKG--AQGLPGIT----GQSGLPGLPGQQGA 868
Query: 307 PGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAAR 366
PG PG+ G + T + G G V A G PG + PG+ G +
Sbjct: 869 PGIP---GFPGSKGEMGVMGT--PGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLK 923
Query: 367 GRYRSHPKGNCSPGSSPG 384
G KG+ PG
Sbjct: 924 G-----DKGDVGLPGKPG 936
Score = 33.5 bits (75), Expect = 0.75
Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 296 GKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPG 355
G+ G +GPPG +PG G + G G V GPPG PG
Sbjct: 1357 GEPGLPGPEGPPGLKGLQGLPGPKGQQ-----------GVTGLVGIPGPPGIPGFDGAPG 1405
Query: 356 AGGTHSPIAARGRYRSHPKGNCSPGSSPGF-GELWPLG 392
G P G P+G P G G + P G
Sbjct: 1406 QKGEMGPAGPTG-----PRGFPGPPGPDGLPGSMGPPG 1438
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P G +GPR G GPQG K G P G + + G
Sbjct: 488 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG--------PPGVKGENGHPGSPGEKG 539
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
K G A + K P + P GPE P L P+ +
Sbjct: 540 -EKGETGQAGSPGEKGEAGEKGNPGAEVPGLP-GPEGPPGPPGLQGVPGPK-------GE 590
Query: 265 TWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
GA +G +G D G+P G G GPPGT +PG +G
Sbjct: 591 AGLDGAKGEKGFQGEKGDRGPLGLP----------GASGLDGRPGPPGTPGPIGVPGPAG 640
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
+ + + G G A G PG H G G +RG PKG+
Sbjct: 641 PKGERGS--KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG-----PKGDKGDQ 693
Query: 381 SSPGFGELWPLGQ 393
+PG PLG+
Sbjct: 694 GAPGLDAPCPLGE 706
Score = 42.0 bits (97), Expect = 0.002
Identities = 74/305 (24%), Positives = 103/305 (33%), Gaps = 51/305 (16%)
Query: 113 GLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQG 172
G + +G+ + + AG ++ P+ PPG P G GP L G GP+G
Sbjct: 134 GDKGAIGMPGRVGSPGDAGLSIIG---PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 190
Query: 173 SLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFS-KWVPC 229
+ +G P G + Q G PH+ + + A +SS + + K +P
Sbjct: 191 DMGLTG--------PPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPL 242
Query: 230 QPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSAD-GIPELT 288
L+ P P + R + SQ QG G G S G P L
Sbjct: 243 --LNSVRLAPPPVIK----------RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP 290
Query: 289 CYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRS----PIATRRRSKCGKCGTVTA--- 341
G G GPPG + G G + P + G G A
Sbjct: 291 -------GPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 343
Query: 342 --QGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQCPCVA 399
G PGT E G+ G + +G KG+ G GE P G P
Sbjct: 344 GEPGIPGTKGEKGAEGSPGLPGLLGQKGE-----KGDAGNSIGGGRGEPGPPGLPGP--- 395
Query: 400 QGPHG 404
GP G
Sbjct: 396 PGPKG 400
Score = 37.4 bits (85), Expect = 0.052
Identities = 67/289 (23%), Positives = 88/289 (30%), Gaps = 47/289 (16%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P G G + G RG G K G A + AG T
Sbjct: 292 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 351
Query: 200 RAQAG-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
+ + G P G A +S + P P P GP+ +
Sbjct: 352 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDG-QVGP 410
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ---RSKCGKCGTVPTQGPPGT 309
+P QG +G++G G E+ Y + T+ GPPG
Sbjct: 411 PGQPGDKGERGAAGEQGPDGPKGSKGEPGKG--EMVDYNGNINEALQEIRTLALMGPPGL 468
Query: 310 NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
Q PGA G PG E +PG G RG+
Sbjct: 469 PGQIGPPGAPGI-----------------------PGQKGEIGLPGPPGHDGEKGPRGK- 504
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
PG G P G+ P +G +G G P + G T
Sbjct: 505 ---------PGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGET 544
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P G +GPR G GPQG K G P G + + G
Sbjct: 426 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG--------PPGVKGENGHPGSPGEKG 477
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
K G A + K P + P GPE P L P+ +
Sbjct: 478 -EKGETGQAGSPGEKGEAGEKGNPGAEVPGLP-GPEGPPGPPGLQGVPGPK-------GE 528
Query: 265 TWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
GA +G +G D G+P G G GPPGT +PG +G
Sbjct: 529 AGLDGAKGEKGFQGEKGDRGPLGLP----------GASGLDGRPGPPGTPGPIGVPGPAG 578
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
+ + + G G A G PG H G G +RG PKG+
Sbjct: 579 PKGERGS--KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG-----PKGDKGDQ 631
Query: 381 SSPGFGELWPLGQ 393
+PG PLG+
Sbjct: 632 GAPGLDAPCPLGE 644
Score = 42.0 bits (97), Expect = 0.002
Identities = 68/262 (25%), Positives = 85/262 (32%), Gaps = 30/262 (11%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ PPG P G GP L G GP+G + +G P G
Sbjct: 137 PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTG--------PPGQPGPQGQKGE 188
Query: 200 RAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR-- 255
+ Q G PH R + A G P PL HP P P P L P+
Sbjct: 189 KGQCGEYPH-RGEQSQASIQGPPGPPGPPGPSGPLG-HPGLPGPMG-PPGLPGPPGPKGD 245
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P H + +G G G A G P + G+ G T+G G +
Sbjct: 246 PGIQGYHGRKGERGMPGMPGKHG--AKGAPGIAV--AGMKGEPGIPGTKGEKGAEGSPGL 301
Query: 316 PGASGTRSPIATRRRS---KCGKCGTVTAQGPPGTHAECAM------PGAGGTHSPIAAR 366
PG G + S G+ G GPPG E + PG G A
Sbjct: 302 PGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAA 361
Query: 367 GRYRSHPKGNCSPGSSPGFGEL 388
G P G PG GE+
Sbjct: 362 G--EQGPDGPKGSKGEPGKGEM 381
Score = 42.0 bits (97), Expect = 0.002
Identities = 75/294 (25%), Positives = 93/294 (31%), Gaps = 54/294 (18%)
Query: 138 QHPQKPPG--GPQRP----------SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV 185
Q P PPG GP P P GL GP G +G G + G+ P
Sbjct: 207 QGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGM----PG 262
Query: 186 RPAGHLACGA-GIWTRAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
P H A GA GI G P + A G+ GL + G
Sbjct: 263 MPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 322
Query: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGK--- 297
P L P+ G Q G +G RG + + P+ + + GK
Sbjct: 323 GEPGPPGLPGPPGPKGEAGV-DGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEM 381
Query: 298 -------------CGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGP 344
T+ GPPG Q PGA G G+ G + GP
Sbjct: 382 VDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIP-----------GQKGEIGLPGP 430
Query: 345 PGTHAECAMPGAGGTHSPIAARG-RYRSHPKG----NCSPGSSPGFGELWPLGQ 393
PG E G G P +G + P G N PGS GE GQ
Sbjct: 431 PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQ 484
Score = 37.4 bits (85), Expect = 0.052
Identities = 67/289 (23%), Positives = 88/289 (30%), Gaps = 47/289 (16%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P G G + G RG G K G A + AG T
Sbjct: 230 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 289
Query: 200 RAQAG-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
+ + G P G A +S + P P P GP+ +
Sbjct: 290 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDG-QVGP 348
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ---RSKCGKCGTVPTQGPPGT 309
+P QG +G++G G E+ Y + T+ GPPG
Sbjct: 349 PGQPGDKGERGAAGEQGPDGPKGSKGEPGKG--EMVDYNGNINEALQEIRTLALMGPPGL 406
Query: 310 NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
Q PGA G PG E +PG G RG+
Sbjct: 407 PGQIGPPGAPGI-----------------------PGQKGEIGLPGPPGHDGEKGPRGK- 442
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
PG G P G+ P +G +G G P + G T
Sbjct: 443 ---------PGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGET 482
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P G +GPR G GPQG K G P G + + G
Sbjct: 435 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG--------PPGVKGENGHPGSPGEKG 486
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
K G A + K P + P GPE P L P+ +
Sbjct: 487 -EKGETGQAGSPGEKGEAGEKGNPGAEVPGLP-GPEGPPGPPGLQGVPGPK-------GE 537
Query: 265 TWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
GA +G +G D G+P G G GPPGT +PG +G
Sbjct: 538 AGLDGAKGEKGFQGEKGDRGPLGLP----------GASGLDGRPGPPGTPGPIGVPGPAG 587
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
+ + + G G A G PG H G G +RG PKG+
Sbjct: 588 PKGERGS--KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG-----PKGDKGDQ 640
Query: 381 SSPGFGELWPLGQ 393
+PG PLG+
Sbjct: 641 GAPGLDAPCPLGE 653
Score = 42.0 bits (97), Expect = 0.002
Identities = 68/262 (25%), Positives = 85/262 (32%), Gaps = 30/262 (11%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P+ PPG P G GP L G GP+G + +G P G
Sbjct: 146 PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTG--------PPGQPGPQGQKGE 197
Query: 200 RAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPR-- 255
+ Q G PH R + A G P PL HP P P P L P+
Sbjct: 198 KGQCGEYPH-RGEQSQASIQGPPGPPGPPGPSGPLG-HPGLPGPMG-PPGLPGPPGPKGD 254
Query: 256 PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAM 315
P H + +G G G A G P + G+ G T+G G +
Sbjct: 255 PGIQGYHGRKGERGMPGMPGKHG--AKGAPGIAV--AGMKGEPGIPGTKGEKGAEGSPGL 310
Query: 316 PGASGTRSPIATRRRS---KCGKCGTVTAQGPPGTHAECAM------PGAGGTHSPIAAR 366
PG G + S G+ G GPPG E + PG G A
Sbjct: 311 PGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAA 370
Query: 367 GRYRSHPKGNCSPGSSPGFGEL 388
G P G PG GE+
Sbjct: 371 G--EQGPDGPKGSKGEPGKGEM 390
Score = 42.0 bits (97), Expect = 0.002
Identities = 75/294 (25%), Positives = 93/294 (31%), Gaps = 54/294 (18%)
Query: 138 QHPQKPPG--GPQRP----------SPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPV 185
Q P PPG GP P P GL GP G +G G + G+ P
Sbjct: 216 QGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGM----PG 271
Query: 186 RPAGHLACGA-GIWTRAQAG----PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPE 240
P H A GA GI G P + A G+ GL + G
Sbjct: 272 MPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 331
Query: 241 PSSRPHALSTAASPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQRSKCGK--- 297
P L P+ G Q G +G RG + + P+ + + GK
Sbjct: 332 GEPGPPGLPGPPGPKGEAGV-DGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEM 390
Query: 298 -------------CGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGP 344
T+ GPPG Q PGA G G+ G + GP
Sbjct: 391 VDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIP-----------GQKGEIGLPGP 439
Query: 345 PGTHAECAMPGAGGTHSPIAARG-RYRSHPKG----NCSPGSSPGFGELWPLGQ 393
PG E G G P +G + P G N PGS GE GQ
Sbjct: 440 PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQ 493
Score = 37.4 bits (85), Expect = 0.052
Identities = 67/289 (23%), Positives = 88/289 (30%), Gaps = 47/289 (16%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P G G + G RG G K G A + AG T
Sbjct: 239 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 298
Query: 200 RAQAG-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
+ + G P G A +S + P P P GP+ +
Sbjct: 299 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDG-QVGP 357
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ---RSKCGKCGTVPTQGPPGT 309
+P QG +G++G G E+ Y + T+ GPPG
Sbjct: 358 PGQPGDKGERGAAGEQGPDGPKGSKGEPGKG--EMVDYNGNINEALQEIRTLALMGPPGL 415
Query: 310 NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
Q PGA G PG E +PG G RG+
Sbjct: 416 PGQIGPPGAPGI-----------------------PGQKGEIGLPGPPGHDGEKGPRGK- 451
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
PG G P G+ P +G +G G P + G T
Sbjct: 452 ---------PGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGET 491
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P G +GPR G GPQG K G P G + + G
Sbjct: 447 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG--------PPGVKGENGHPGSPGEKG 498
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
K G A + K P + P GPE P L P+ +
Sbjct: 499 -EKGETGQAGSPGEKGEAGEKGNPGAEVPGLP-GPEGPPGPPGLQGVPGPK-------GE 549
Query: 265 TWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
GA +G +G D G+P G G GPPGT +PG +G
Sbjct: 550 AGLDGAKGEKGFQGEKGDRGPLGLP----------GASGLDGRPGPPGTPGPIGVPGPAG 599
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
+ + + G G A G PG H G G +RG PKG+
Sbjct: 600 PKGERGS--KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG-----PKGDKGDQ 652
Query: 381 SSPGFGELWPLGQ 393
+PG PLG+
Sbjct: 653 GAPGLDAPCPLGE 665
Score = 42.7 bits (99), Expect = 0.001
Identities = 72/289 (24%), Positives = 96/289 (33%), Gaps = 33/289 (11%)
Query: 113 GLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQG 172
G + +G+ + + AG ++ P+ PPG P G GP L G GP+G
Sbjct: 134 GDKGAIGMPGRVGSPGDAGLSIIG---PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 190
Query: 173 SLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ 230
+ +G P G + Q G PH R + A G P
Sbjct: 191 DMGLTG--------PPGQPGPQGQKGEKGQCGEYPH-RGEQSQASIQGPPGPPGPPGPSG 241
Query: 231 PLSQHPTGPEPSSRPHALSTAASPR--PCWGAGHSQTWRQGAGEAQGTRGGSADGIPELT 288
PL HP P P P L P+ P H + +G G G A G P +
Sbjct: 242 PLG-HPGLPGPMG-PPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHG--AKGAPGIA 297
Query: 289 CYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRS---KCGKCGTVTAQGPP 345
G+ G T+G G +PG G + S G+ G GPP
Sbjct: 298 V--AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPP 355
Query: 346 GTHAECAM------PGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGEL 388
G E + PG G A G P G PG GE+
Sbjct: 356 GPKGEAGVDGQVGPPGQPGDKGERGAAG--EQGPDGPKGSKGEPGKGEM 402
Score = 37.4 bits (85), Expect = 0.052
Identities = 67/289 (23%), Positives = 88/289 (30%), Gaps = 47/289 (16%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P G G + G RG G K G A + AG T
Sbjct: 251 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 310
Query: 200 RAQAG-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
+ + G P G A +S + P P P GP+ +
Sbjct: 311 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDG-QVGP 369
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ---RSKCGKCGTVPTQGPPGT 309
+P QG +G++G G E+ Y + T+ GPPG
Sbjct: 370 PGQPGDKGERGAAGEQGPDGPKGSKGEPGKG--EMVDYNGNINEALQEIRTLALMGPPGL 427
Query: 310 NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
Q PGA G PG E +PG G RG+
Sbjct: 428 PGQIGPPGAPGI-----------------------PGQKGEIGLPGPPGHDGEKGPRGK- 463
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
PG G P G+ P +G +G G P + G T
Sbjct: 464 ---------PGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGET 503
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 145 GGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG 204
G P P G +GPR G GPQG K G P G + + G
Sbjct: 466 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG--------PPGVKGENGHPGSPGEKG 517
Query: 205 PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWGAGHSQ 264
K G A + K P + P GPE P L P+ +
Sbjct: 518 -EKGETGQAGSPGEKGEAGEKGNPGAEVPGLP-GPEGPPGPPGLQGVPGPK-------GE 568
Query: 265 TWRQGAGEAQGTRGGSAD----GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASG 320
GA +G +G D G+P G G GPPGT +PG +G
Sbjct: 569 AGLDGAKGEKGFQGEKGDRGPLGLP----------GASGLDGRPGPPGTPGPIGVPGPAG 618
Query: 321 TRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPG 380
+ + + G G A G PG H G G +RG PKG+
Sbjct: 619 PKGERGS--KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRG-----PKGDKGDQ 671
Query: 381 SSPGFGELWPLGQ 393
+PG PLG+
Sbjct: 672 GAPGLDAPCPLGE 684
Score = 46.6 bits (109), Expect = 9e-05
Identities = 72/305 (23%), Positives = 100/305 (32%), Gaps = 46/305 (15%)
Query: 113 GLEAGVGVGCGLRTAQPAGFELLAWQHPQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQG 172
G + +G+ + + AG ++ P+ PPG P G GP L G GP+G
Sbjct: 134 GDKGAIGMPGRVGSPGDAGLSIIG---PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 190
Query: 173 SLCKSGLCCAHPVRPAGHLACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFS-KWVPC 229
+ +G P G + Q G PH+ + + A +SS + + K
Sbjct: 191 DMGLTG--------PPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQS 242
Query: 230 QPLSQHPTGPE-PSSRPHALSTAASPRPCWGAG----------------HSQTWRQGAGE 272
Q Q P GP P L P P G H + +G
Sbjct: 243 QASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPG 302
Query: 273 AQGTRGGSADGIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRS- 331
G G A G P + G+ G T+G G +PG G + S
Sbjct: 303 MPGKHG--AKGAPGIAV--AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSI 358
Query: 332 --KCGKCGTVTAQGPPGTHAECAM------PGAGGTHSPIAARGRYRSHPKGNCSPGSSP 383
G+ G GPPG E + PG G A G P G P
Sbjct: 359 GGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAG--EQGPDGPKGSKGEP 416
Query: 384 GFGEL 388
G GE+
Sbjct: 417 GKGEM 421
Score = 37.4 bits (85), Expect = 0.052
Identities = 67/289 (23%), Positives = 88/289 (30%), Gaps = 47/289 (16%)
Query: 140 PQKPPGGPQRPSPGGLRGPRSLSGSSPWRGPQGSLCKSGLCCAHPVRPAGHLACGAGIWT 199
P PPG P P P G G + G RG G K G A + AG T
Sbjct: 270 PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 329
Query: 200 RAQAG-------PHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAA 252
+ + G P G A +S + P P P GP+ +
Sbjct: 330 KGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDG-QVGP 388
Query: 253 SPRPCWGAGHSQTWRQGAGEAQGTRGGSADGIPELTCYQ---RSKCGKCGTVPTQGPPGT 309
+P QG +G++G G E+ Y + T+ GPPG
Sbjct: 389 PGQPGDKGERGAAGEQGPDGPKGSKGEPGKG--EMVDYNGNINEALQEIRTLALMGPPGL 446
Query: 310 NPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQGPPGTHAECAMPGAGGTHSPIAARGRY 369
Q PGA G PG E +PG G RG+
Sbjct: 447 PGQIGPPGAPGI-----------------------PGQKGEIGLPGPPGHDGEKGPRGK- 482
Query: 370 RSHPKGNCSPGSSPGFGELWPLGQQCPCVAQGPHG-GGKPSQALAAGPT 417
PG G P G+ P +G +G G P + G T
Sbjct: 483 ---------PGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGET 522
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,881,930
Number of Sequences: 37866
Number of extensions: 2496654
Number of successful extensions: 17438
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 449
Number of HSP's that attempted gapping in prelim test: 10178
Number of HSP's gapped (non-prelim): 3047
length of query: 755
length of database: 18,247,518
effective HSP length: 110
effective length of query: 645
effective length of database: 14,082,258
effective search space: 9083056410
effective search space used: 9083056410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.