Guide to the Human Genome
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Name: LOC100127987 Sequence: fasta or formatted (755aa) NCBI GI: 239757081
Description:

PREDICTED: hypothetical protein LOC100127987

Not currently referenced in the text

Other entries for this name:
alt prot {755aa} PREDICTED: hypothetical protein LOC100127987
alt prot {755aa} PREDICTED: hypothetical protein LOC100127987
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         72           3
 C cysteine            3.8         29           2
 D aspartate           2.4         18           2
 E glutamate           3.4         26           1
 F phenylalanine       2.4         18           2
 G glycine            13.9        105           3
 H histidine           4.1         31           2
 I isoleucine          2.4         18           2
 K lysine              2.9         22           2
 L leucine             5.7         43           2
 M methionine          2.3         17           1
 N asparagine          1.6         12           1
 P proline            10.6         80           2
 Q glutamine           5.2         39           2
 R arginine            7.3         55           3
 S serine              9.0         68           2
 T threonine           6.2         47           2
 V valine              4.0         30           1
 W tryptophan          2.6         20           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.996   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.996   PREDICTED: hypothetical protein LOC100127987 
COL5A1                0.030   alpha 1 type V collagen preproprotein 
COL1A1                0.026   alpha 1 type I collagen preproprotein 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.023   alpha 1 type VII collagen precursor 
COL1A2                0.021   alpha 2 type I collagen 
COL8A2                0.021   collagen, type VIII, alpha 2 
COL27A1               0.021   collagen, type XXVII, alpha 1 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
COL11A2               0.020   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.020   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.020   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL4A4                0.020   alpha 4 type IV collagen precursor 
COL11A1               0.019   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.019   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.019   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL3A1                0.018   collagen type III alpha 1 preproprotein 
COL22A1               0.018   collagen, type XXII, alpha 1 
COL9A2                0.018   alpha 2 type IX collagen 
COL5A3                0.018   collagen, type V, alpha 3 preproprotein 
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
COL4A1                0.017   alpha 1 type IV collagen preproprotein 
COL13A1               0.017   alpha 1 type XIII collagen isoform 20 
COL13A1               0.017   alpha 1 type XIII collagen isoform 18 
COL13A1               0.017   alpha 1 type XIII collagen isoform 14 
COL13A1               0.017   alpha 1 type XIII collagen isoform 10 
COL13A1               0.017   alpha 1 type XIII collagen isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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