Guide to the Human Genome
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Name: LOC400236 Sequence: fasta or formatted (330aa) NCBI GI: 169207076
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {225aa} PREDICTED: hypothetical protein
alt mRNA {330aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         32           3
 C cysteine            2.1          7           1
 D aspartate           2.1          7           1
 E glutamate           3.9         13           1
 F phenylalanine       3.0         10           1
 G glycine            14.8         49           2
 H histidine           1.2          4           1
 I isoleucine          0.9          3           1
 K lysine              1.5          5           2
 L leucine             7.9         26           2
 M methionine          0.6          2           1
 N asparagine          2.1          7           1
 P proline            14.5         48           2
 Q glutamine           3.3         11           2
 R arginine           14.5         48           3
 S serine              7.3         24           2
 T threonine           5.2         17           1
 V valine              3.9         13           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC400236             1.000   PREDICTED: hypothetical protein 
LOC400236             0.340   PREDICTED: hypothetical protein 
COL3A1                0.063   collagen type III alpha 1 preproprotein 
COL16A1               0.056   alpha 1 type XVI collagen precursor 
COL1A1                0.056   alpha 1 type I collagen preproprotein 
COL2A1                0.053   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.053   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A3                0.051   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 1 precursor 
COL4A3                0.051   alpha 3 type IV collagen isoform 5 precursor 
COL1A2                0.048   alpha 2 type I collagen 
COL8A2                0.048   collagen, type VIII, alpha 2 
COL27A1               0.047   collagen, type XXVII, alpha 1 
COL9A1                0.047   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.045   alpha 1 type IX collagen isoform 2 precursor 
COL4A6                0.044   type IV alpha 6 collagen isoform A precursor 
COL4A4                0.044   alpha 4 type IV collagen precursor 
COL4A6                0.044   type IV alpha 6 collagen isoform B precursor 
COL18A1               0.042   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.042   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.042   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL11A2               0.042   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.042   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.042   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL8A1                0.042   alpha 1 type VIII collagen precursor 
COL8A1                0.042   alpha 1 type VIII collagen precursor 
COL7A1                0.041   alpha 1 type VII collagen precursor 
COL17A1               0.041   alpha 1 type XVII collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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