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Search of human proteins with 169181042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169181042 PREDICTED: hypothetical protein [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169177615 PREDICTED: hypothetical protein [Homo sapiens] 254 8e-69
gi|169179060 PREDICTED: hypothetical protein [Homo sapiens] 254 8e-69
gi|169181042 PREDICTED: hypothetical protein [Homo sapiens] 254 8e-69
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 35 0.018
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.051
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 32 0.11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.15
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.15
gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens] 32 0.15
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 0.25
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 0.25
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 0.25
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 0.33
gi|116089333 kelch domain containing 7A [Homo sapiens] 30 0.33
gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens] 30 0.43
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 0.43
gi|145309324 FH2 domain containing 1 [Homo sapiens] 30 0.43
gi|61699226 pulmonary surfactant-associated protein D precursor ... 30 0.57
gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens] 30 0.57
gi|7706659 paired related homeobox 2 [Homo sapiens] 30 0.57
gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens] 29 0.74
gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens] 29 0.74
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 29 0.74
gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens] 29 0.74
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 29 0.74
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 29 0.74
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 29 0.74
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 29 0.74
gi|222352127 sidekick 2 [Homo sapiens] 29 0.97
gi|169217528 PREDICTED: similar to sidekick homolog 2 (chicken) ... 29 0.97
>gi|169177615 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 254 bits (650), Expect = 8e-69
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL
Sbjct: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
Query: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST
Sbjct: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
Query: 121 W 121
W
Sbjct: 121 W 121
>gi|169179060 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 254 bits (650), Expect = 8e-69
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL
Sbjct: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
Query: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST
Sbjct: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
Query: 121 W 121
W
Sbjct: 121 W 121
>gi|169181042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 254 bits (650), Expect = 8e-69
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL
Sbjct: 1 MGGSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPEL 60
Query: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST
Sbjct: 61 RREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
Query: 121 W 121
W
Sbjct: 121 W 121
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 34.7 bits (78), Expect = 0.018
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 8 PGRSVGAAPRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPE-LRREGL 65
PG G AP+ G P T P RL GL R EE S + + E LR +
Sbjct: 1121 PGLLSGPAPQKRMGGPGTPRAPLRLALPGLPAALEGRPEEEEEDSEDSDESDEELRCYSV 1180
Query: 66 RNPSDGAQGSGASKPVLLCPSPSGTGARGERSL 98
+ PS+ ++ + PV++ S S AR RSL
Sbjct: 1181 QEPSEDSEEEAPAVPVVVAESQS---ARNLRSL 1210
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.1 bits (74), Expect = 0.051
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 3 GSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRR 62
GSV PG S +G +G P G+P G G RG GR + P R
Sbjct: 2446 GSVGPPGAS---GLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRG 2502
Query: 63 EGLRNPSDGAQG----SGASKPVLLCPSPSGT----GARGERSLE-QHIAGSPNWTPAEN 113
E G+ G G S +L P P G G RG R L+ N P +
Sbjct: 2503 ERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDK 2562
Query: 114 GSK 116
GSK
Sbjct: 2563 GSK 2565
Score = 25.8 bits (55), Expect = 8.2
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 8 PGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRG 44
PG S A G G P G+P R G +G R G RG
Sbjct: 2027 PGPSGLAGEPGKPGIP--GLPGRAGGVGEAGRPGERG 2061
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 3 GSVIKPGRSVGAAPRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELR 61
G + +PG RG QG P G P R+GA GLQ RG +G R
Sbjct: 554 GELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKG---------------TR 598
Query: 62 REGLRNPSDGAQGSGASKPVLLCPSPSG-TGARGER 96
E DG G P PSG G +GE+
Sbjct: 599 GEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEK 634
Score = 29.6 bits (65), Expect = 0.57
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 3 GSVIKP----GRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRG 44
GSV++ G PRGHQGAP G P G +G + R G G
Sbjct: 647 GSVVQQEGLKGEQGAPGPRGHQGAP--GPPGARGPIGPEGRDGPPG 690
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.6 bits (70), Expect = 0.15
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 9 GRSVGAAPRGHQGAPTR-GIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRN 67
G S A P+G G P R G P GA GL R G G + + + E R
Sbjct: 534 GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK------VGPSGAPGEDGRP 587
Query: 68 PSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSP 106
G QG+ V+ P P G ++ E+ + G+P
Sbjct: 588 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626
Score = 28.5 bits (62), Expect = 1.3
Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 39/125 (31%)
Query: 3 GSVIKPGRSVGAAPRGHQGAP----------------------TRGIPERLGALGLQYRR 40
G+ PG + A RG QGAP +G+P GA GL R
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698
Query: 41 GSRGREERNHSTQTIFTPELRREGLRNP--------SDGAQG-SGASKPVLLCPSPSGTG 91
G RG S +GL+ P +DG +G SG + P P G
Sbjct: 699 GERGFPGERGSPGA--------QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750
Query: 92 ARGER 96
GER
Sbjct: 751 MPGER 755
Score = 25.8 bits (55), Expect = 8.2
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 3 GSVIKPGRSVGAAPRGHQGAP----------TRGIPERLGALGLQYRRGSRGREERNHST 52
G+ + GR P+G +G P G P + G GL G RG ++ T
Sbjct: 579 GAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGET 638
Query: 53 QTIFTPELRREGLRNPSDGAQGSGASKPVLLCPSPSGTGAR-GERSLEQHIAGSPNWT-- 109
P GA G + + P P G G + G++ + AG+P
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE-AGAPGLVGP 697
Query: 110 ------PAENGS 115
P E GS
Sbjct: 698 RGERGFPGERGS 709
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.6 bits (70), Expect = 0.15
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 9 GRSVGAAPRGHQGAPTR-GIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRN 67
G S A P+G G P R G P GA GL R G G + + + E R
Sbjct: 465 GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK------VGPSGAPGEDGRP 518
Query: 68 PSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSP 106
G QG+ V+ P P G ++ E+ + G+P
Sbjct: 519 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557
Score = 28.5 bits (62), Expect = 1.3
Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 39/125 (31%)
Query: 3 GSVIKPGRSVGAAPRGHQGAP----------------------TRGIPERLGALGLQYRR 40
G+ PG + A RG QGAP +G+P GA GL R
Sbjct: 570 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 629
Query: 41 GSRGREERNHSTQTIFTPELRREGLRNP--------SDGAQG-SGASKPVLLCPSPSGTG 91
G RG S +GL+ P +DG +G SG + P P G
Sbjct: 630 GERGFPGERGSPGA--------QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681
Query: 92 ARGER 96
GER
Sbjct: 682 MPGER 686
Score = 25.8 bits (55), Expect = 8.2
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 3 GSVIKPGRSVGAAPRGHQGAP----------TRGIPERLGALGLQYRRGSRGREERNHST 52
G+ + GR P+G +G P G P + G GL G RG ++ T
Sbjct: 510 GAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGET 569
Query: 53 QTIFTPELRREGLRNPSDGAQGSGASKPVLLCPSPSGTGAR-GERSLEQHIAGSPNWT-- 109
P GA G + + P P G G + G++ + AG+P
Sbjct: 570 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE-AGAPGLVGP 628
Query: 110 ------PAENGS 115
P E GS
Sbjct: 629 RGERGFPGERGS 640
>gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens]
Length = 800
Score = 31.6 bits (70), Expect = 0.15
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 4 SVIKPGRSVGAAPRGHQGAPTRGIPERLGA---------------LGLQYRRGSRGREER 48
S + P R G+A RG RG P GA + ++ S + R
Sbjct: 361 SSLHPPRGAGSATRGGGAPSQRGTPGAGGAGRARGNSFTKFGNRNVFMKDNSSSSSTDSR 420
Query: 49 NHSTQTIFTPELRREGLRNPSDGAQGSGASKPV-LLCPSPSGTGARG 94
+ S+ T RR + SD + PV P P G G RG
Sbjct: 421 SRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRG 467
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 16 PRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNP--SDGA 72
P G QG P T+G+P GA+G +G +G+ + P G P + G
Sbjct: 561 PPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP--GHPGKEGPPGTKGN 618
Query: 73 QGSGASKPVLLCPSPSGT-GARGERSLEQH 101
QG + L P P G G G R L+ H
Sbjct: 619 QGPSGPQGPLGYPGPRGVKGVDGIRGLKGH 648
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 16 PRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNP--SDGA 72
P G QG P T+G+P GA+G +G +G+ + P G P + G
Sbjct: 540 PPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP--GHPGKEGPPGTKGN 597
Query: 73 QGSGASKPVLLCPSPSGT-GARGERSLEQH 101
QG + L P P G G G R L+ H
Sbjct: 598 QGPSGPQGPLGYPGPRGVKGVDGIRGLKGH 627
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 16 PRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNP--SDGA 72
P G QG P T+G+P GA+G +G +G+ + P G P + G
Sbjct: 647 PPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP--GHPGKEGPPGTKGN 704
Query: 73 QGSGASKPVLLCPSPSGT-GARGERSLEQH 101
QG + L P P G G G R L+ H
Sbjct: 705 QGPSGPQGPLGYPGPRGVKGVDGIRGLKGH 734
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 30.4 bits (67), Expect = 0.33
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 GSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRG 44
G KPGR P G QGA RG+P G G++ RG G
Sbjct: 233 GEAGKPGRPGERGPPGPQGA--RGLPGTAGLPGMKGHRGFSG 272
Score = 29.6 bits (65), Expect = 0.57
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 14 AAPRGHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNP---- 68
A P G G P +G+P LGA G RG RG F E +G P
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-----------FPGERGVQGPPGPAGPR 697
Query: 69 -SDGAQGSGASKPVLLCP-SPSGTGARGERSL--EQHIAGSP 106
++GA G+ +K P +P GA G + + E+ AG P
Sbjct: 698 GANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLP 739
Score = 27.3 bits (59), Expect = 2.8
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 18 GHQGAP-TRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNP--SDGAQG 74
G QGAP +G+P GA GL +G RG + + +R GL P G G
Sbjct: 719 GSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR--GLTGPIGPPGPAG 776
Query: 75 SGASKPVLLCPSPSG-TGARG 94
+ K P+G TGARG
Sbjct: 777 APGDKGESGPSGPAGPTGARG 797
>gi|116089333 kelch domain containing 7A [Homo sapiens]
Length = 777
Score = 30.4 bits (67), Expect = 0.33
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 8 PGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRN 67
PG A G Q T+G ER + +RG + Q PEL+
Sbjct: 323 PGSLGTGAASGGQAGDTKGAAERAASPQTGPWPSTRGFSRKESLLQIAENPELQ------ 376
Query: 68 PSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHI 102
Q G P CP P G S E H+
Sbjct: 377 ----LQPDGFRLPAPPCPDPGALPGLGRSSREPHV 407
>gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]
Length = 1090
Score = 30.0 bits (66), Expect = 0.43
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 22 APTRG-------IPERL-GALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNPSDGAQ 73
APTRG IP G LQ+R G + T TI P R ++ A
Sbjct: 769 APTRGTDTGTLTIPALTWGRSLLQHRHGDAHYCSTDMGTLTIPAPTQGRSLFQHQHGDAH 828
Query: 74 GSGASKPVLLCPSPSGTGARGERSLEQHIAGSPNWTPAENGSKWGST 120
S L +P+ RG RSL QH G+P W ++ + G T
Sbjct: 829 YSSTDTGTLTIAAPT----RG-RSLLQHQHGAPTWGRSQFQHRHGDT 870
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.0 bits (66), Expect = 0.43
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 2 GGSVIKPGRSVGAA----PRGHQGAPTRGI--PERLGALGLQYRRGSRGREE--RNHS 51
G ++ PGR GAA P G +GA RG P ALG+ GS E+ R HS
Sbjct: 2698 GDRMLCPGRMDGAALGEQPTGQKGASARGFWGPRETKALGVCKESGSEPAEDSSRAHS 2755
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 30.0 bits (66), Expect = 0.43
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 2 GGSVIKPGRSVGAAPRGH----QGAPTRGIPERLGALGLQYRRGSRGREERNHSTQTIFT 57
G S +PGR V PRG P R +P + R S G E +T
Sbjct: 963 GSSSTRPGRDVPLQPRGSFKKPSAKPLRNLPRQKPEENKTCRAHSEGPESPKEEPKTPSV 1022
Query: 58 PELRREGLRNPS 69
P + E R PS
Sbjct: 1023 PSVPHELPRVPS 1034
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 0.57
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 7 KPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRG 44
KPG A P+G GAP G+ GA GL +G RG
Sbjct: 134 KPGPKGEAGPKGEVGAP--GMQGSAGARGLAGPKGERG 169
>gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens]
Length = 520
Score = 29.6 bits (65), Expect = 0.57
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 10 RSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGRE-ERNHSTQ-------TIFTPELR 61
R +G RG +G R RLG YR +RG ER+ S + + + R
Sbjct: 361 RILGCQCRG-RGRRRRRRRRRLGGCAYTYRPWTRGGSLERSQSRKDSLDDSGSCLSGSQR 419
Query: 62 REGLRNPSDGAQGSGASKPVLLCPSP 87
+PS G G GA PV LC P
Sbjct: 420 TLPSASPSPGYLGRGAPPPVELCAFP 445
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 29.6 bits (65), Expect = 0.57
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 59 ELRREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQ 100
E R R PS G+ GS A+ CPSP G G+ +R +Q
Sbjct: 64 EAREGAAREPSGGSSGSEAAPQDGECPSP-GRGSAAKRKKKQ 104
>gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 29.3 bits (64), Expect = 0.74
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 18 GHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQT-------IFTPELRRE-----GL 65
G GAP +R LGL RG +GR R + + + P R+E G
Sbjct: 100 GAAGAPPASADQRRRLLGLAQTRGGKGRRGREDAAEARAAGCRLVVQPRPRKEKWEERGA 159
Query: 66 RNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSP 106
R P+ A ++ V P+ + + S + P
Sbjct: 160 RRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPP 200
>gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 246
Score = 29.3 bits (64), Expect = 0.74
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 18 GHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQT-------IFTPELRRE-----GL 65
G GAP +R LGL RG +GR R + + + P R+E G
Sbjct: 66 GAAGAPPASADQRRRLLGLAQTRGGKGRRGREDAAEARAAGCRLVVQPRPRKEKWEERGA 125
Query: 66 RNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSP 106
R P+ A ++ V P+ + + S + P
Sbjct: 126 RRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPP 166
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 0.74
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 23 PTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNPSDGAQGSGASKPVL 82
PTR +P +L GS GR T + TP + G R QG+ P
Sbjct: 291 PTRCLPSPPRSLVAPSESGSAGRRG---GTNGVATPREKLGGKRGVGRKGQGTRLGAPHS 347
Query: 83 LCPSPSGTGARGE 95
L P P RGE
Sbjct: 348 LPPPPPFRTGRGE 360
>gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 29.3 bits (64), Expect = 0.74
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 18 GHQGAPTRGIPERLGALGLQYRRGSRGREERNHSTQT-------IFTPELRRE-----GL 65
G GAP +R LGL RG +GR R + + + P R+E G
Sbjct: 100 GAAGAPPASADQRRRLLGLAQTRGGKGRRGREDAAEARAAGCRLVVQPRPRKEKWEERGA 159
Query: 66 RNPSDGAQGSGASKPVLLCPSPSGTGARGERSLEQHIAGSP 106
R P+ A ++ V P+ + + S + P
Sbjct: 160 RRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPP 200
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 0.74
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 23 PTRGIPERLGALGLQYRRGSRGREERNHSTQTIFTPELRREGLRNPSDGAQGSGASKPVL 82
PTR +P +L GS GR T + TP + G R QG+ P
Sbjct: 291 PTRCLPSPPRSLVAPSESGSAGRRG---GTNGVATPREKLGGKRGVGRKGQGTRLGAPHS 347
Query: 83 LCPSPSGTGARGE 95
L P P RGE
Sbjct: 348 LPPPPPFRTGRGE 360
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 29.3 bits (64), Expect = 0.74
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 44 GREERNHSTQTIF-----TPELRREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSL 98
G EE N+ ++ EL++ G G++ + A++PV P P G
Sbjct: 421 GFEELNNENKSTLQLEQQVKELKKSGGAEEPRGSESAAAARPVAGAPVPQGA-------- 472
Query: 99 EQHIAGSPNWTPAEN 113
+ G WTP E+
Sbjct: 473 --WMCGQAGWTPQEH 485
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 29.3 bits (64), Expect = 0.74
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 40 RGSRGRE-ERNHSTQTIFTPELRREGLRNPSDGAQGSGASKPVLLCPSPSGTGARGERSL 98
R RGR ERN+ +P + RN S S AS+P SPSG+G+R S
Sbjct: 226 REVRGRRPERNYQHSRSRSPHSSQS--RNQSPQRLASQASRPTR---SPSGSGSRSRSSS 280
Query: 99 EQHIAGSPNWTPAENGSKWGST 120
I+ S + + + S S+
Sbjct: 281 SDSISSSSSTSSDSSDSSSSSS 302
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 29.3 bits (64), Expect = 0.74
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 3 GSVIKPGRSVGAAPRGHQGAPTRGIPERLGALGLQYRRGSRGR 45
G V +PG P+G QG P GIP G G++ +GS G+
Sbjct: 394 GPVGQPGPQGRQGPKGEQGPP--GIPGPQGLPGVKGDKGSPGK 434
>gi|222352127 sidekick 2 [Homo sapiens]
Length = 2172
Score = 28.9 bits (63), Expect = 0.97
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 66 RNPSDGAQGSGASKPVLLC-----PSPSGTGARGERSLEQHIAGSPNWTPAENGS 115
R P D G S VL C P P+ T +GER L P +TP E+GS
Sbjct: 406 RGPLDSTVIDGMSV-VLACETSGAPRPAITWQKGERILASGSVQLPRFTPLESGS 459
>gi|169217528 PREDICTED: similar to sidekick homolog 2 (chicken)
[Homo sapiens]
Length = 399
Score = 28.9 bits (63), Expect = 0.97
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 66 RNPSDGAQGSGASKPVLLC-----PSPSGTGARGERSLEQHIAGSPNWTPAENGS 115
R P D G S VL C P P+ T +GER L P +TP E+GS
Sbjct: 218 RGPLDSTVIDGMSV-VLACETSGAPRPAITWQKGERILASGSVQLPRFTPLESGS 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,163,533
Number of Sequences: 37866
Number of extensions: 341688
Number of successful extensions: 1060
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 179
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.