Guide to the Human Genome
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Name: LOC100134174 Sequence: fasta or formatted (399aa) NCBI GI: 169217528
Description:

PREDICTED: similar to sidekick homolog 2 (chicken)

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         25           2
 C cysteine            2.3          9           1
 D aspartate           4.5         18           2
 E glutamate           4.0         16           1
 F phenylalanine       2.0          8           1
 G glycine             8.3         33           2
 H histidine           2.8         11           1
 I isoleucine          5.0         20           2
 K lysine              4.0         16           2
 L leucine             7.3         29           2
 M methionine          1.8          7           1
 N asparagine          1.8          7           1
 P proline             8.8         35           3
 Q glutamine           4.5         18           1
 R arginine            7.5         30           2
 S serine              9.5         38           3
 T threonine           7.8         31           1
 V valine              7.5         30           2
 W tryptophan          1.8          7           1
 Y tyrosine            2.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to sidekick homolog 2 (chicken) ... 
SDK2                  0.699   sidekick 2 
SDK1                  0.364   sidekick 1 
CNTN4                 0.142   contactin 4 isoform a precursor 
CNTN3                 0.134   contactin 3 
HMCN1                 0.129   hemicentin 1 
ROBO3                 0.128   roundabout, axon guidance receptor, homolog 3 
CNTN6                 0.125   contactin 6 
HMCN2                 0.122   PREDICTED: hemicentin 2 
HMCN2                 0.122   PREDICTED: hemicentin 2 
HMCN2                 0.122   PREDICTED: hemicentin 2 
CNTN2                 0.115   contactin 2 precursor 
CNTN4                 0.114   contactin 4 isoform c precursor 
DCC                   0.114   deleted in colorectal carcinoma 
ROBO2                 0.113   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.113   roundabout, axon guidance receptor, homolog 2 isofor...
PXDN                  0.112   peroxidasin 
ROBO1                 0.109   roundabout 1 isoform b 
L1CAM                 0.109   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.109   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.109   L1 cell adhesion molecule isoform 1 precursor 
LOC100292387          0.109   PREDICTED: similar to hemicentin 2 
ROBO1                 0.109   roundabout 1 isoform a 
PXDNL                 0.108   peroxidasin homolog-like 
CNTN1                 0.107   contactin 1 isoform 1 precursor 
CNTN1                 0.107   contactin 1 isoform 2 precursor 
MUSK                  0.107   skeletal muscle receptor tyrosine kinase 
CNTN5                 0.104   contactin 5 isoform long 
CNTN5                 0.104   contactin 5 isoform short 
ROBO1                 0.102   roundabout 1 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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