Guide to the Human Genome
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Name: LOC100133220 Sequence: fasta or formatted (523aa) NCBI GI: 239745299
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {50aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           4
 C cysteine            1.9         10           1
 D aspartate           1.1          6           1
 E glutamate          22.2        116           2
 F phenylalanine       0.6          3           1
 G glycine             5.9         31           2
 H histidine           1.7          9           1
 I isoleucine          1.9         10           2
 K lysine              4.6         24           3
 L leucine            12.6         66           2
 M methionine          1.0          5           1
 N asparagine          2.7         14           2
 P proline             4.2         22           2
 Q glutamine           9.6         50           2
 R arginine           10.9         57           2
 S serine              5.0         26           3
 T threonine           2.9         15           2
 V valine              2.3         12           1
 W tryptophan          1.1          6           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC647042             0.760   PREDICTED: hypothetical protein isoform 1 
LOC647042             0.490   PREDICTED: hypothetical protein isoform 2 
LOC728636             0.489   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.489   hypothetical protein LOC440295 
LOC283767             0.243   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.241   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.241   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.233   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.229   PREDICTED: hypothetical protein LOC645202 
GOLGA6B               0.225   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6D               0.224   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.224   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.222   golgi autoantigen, golgin subfamily a, 6 
LOC653061             0.212   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC283685             0.210   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100132816          0.204   PREDICTED: similar to Putative golgin subfamily A m...
LOC400352             0.202   PREDICTED: similar to Putative golgin subfamily A m...
LOC653061             0.182   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.180   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.176   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.176   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.175   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.172   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.171   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.170   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100133758          0.162   PREDICTED: hypothetical protein, partial 
LOC653720             0.155   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA2                0.154   Golgi autoantigen, golgin subfamily a, 2 
LOC653125             0.153   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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