Guide to the Human Genome
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Name: LOC100130840 Sequence: fasta or formatted (121aa) NCBI GI: 169179060
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {121aa} PREDICTED: hypothetical protein
alt mRNA {121aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          9           2
 C cysteine            0.8          1           1
 D aspartate           0.8          1           1
 E glutamate           6.6          8           2
 F phenylalanine       0.8          1           1
 G glycine            17.4         21           2
 H histidine           2.5          3           1
 I isoleucine          3.3          4           1
 K lysine              2.5          3           1
 L leucine             6.6          8           2
 M methionine          0.8          1           1
 N asparagine          3.3          4           1
 P proline             9.1         11           1
 Q glutamine           4.1          5           1
 R arginine           11.6         14           2
 S serine             10.7         13           1
 T threonine           5.8          7           1
 V valine              2.5          3           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130840          1.000   PREDICTED: hypothetical protein 
LOC100130840          1.000   PREDICTED: hypothetical protein 
AATK                  0.044   apoptosis-associated tyrosine kinase 
COL7A1                0.035   alpha 1 type VII collagen precursor 
COL22A1               0.031   collagen, type XXII, alpha 1 
COL2A1                0.031   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.031   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LENG8                 0.031   leukocyte receptor cluster member 8 
COL11A2               0.026   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.026   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.026   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL1A1                0.022   alpha 1 type I collagen preproprotein 
KLHDC7A               0.022   kelch domain containing 7A 
LOC100132738          0.022   PREDICTED: similar to hCG1817845 
ZNF469                0.022   zinc finger protein 469 
FHDC1                 0.022   FH2 domain containing 1 
SFTPD                 0.022   pulmonary surfactant-associated protein D precursor ...
ADRA1B                0.022   alpha-1B-adrenergic receptor 
PRRX2                 0.022   paired related homeobox 2 
LOC646021             0.017   PREDICTED: similar to hCG1774990 
LOC646021             0.017   PREDICTED: similar to hCG1774990 
LOC100290783          0.017   PREDICTED: hypothetical protein XP_002347614 
LOC646021             0.017   PREDICTED: similar to hCG1774990 
LOC100288864          0.017   PREDICTED: hypothetical protein XP_002343435 
LOC100133220          0.017   PREDICTED: hypothetical protein 
SPEN                  0.017   spen homolog, transcriptional regulator 
COL9A2                0.017   alpha 2 type IX collagen 
SDK2                  0.017   sidekick 2 
LOC100134174          0.017   PREDICTED: similar to sidekick homolog 2 (chicken) ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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