Guide to the Human Genome
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Name: LOC646021 Sequence: fasta or formatted (280aa) NCBI GI: 239756768
Description:

PREDICTED: similar to hCG1774990

Not currently referenced in the text

Other entries for this name:
alt mRNA {280aa} PREDICTED: similar to hCG1774990
alt prot {246aa} PREDICTED: similar to hCG1774990
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         34           2
 C cysteine            1.8          5           1
 D aspartate           3.9         11           2
 E glutamate           3.2          9           2
 F phenylalanine       3.6         10           2
 G glycine             6.8         19           2
 H histidine           1.8          5           1
 I isoleucine          4.3         12           2
 K lysine              3.6         10           1
 L leucine             8.9         25           2
 M methionine          0.7          2           1
 N asparagine          1.8          5           1
 P proline             8.2         23           2
 Q glutamine           4.6         13           1
 R arginine           11.4         32           3
 S serine             10.0         28           2
 T threonine           4.3         12           1
 V valine              6.8         19           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1774990 
LOC646021             1.000   PREDICTED: similar to hCG1774990 
LOC646021             0.821   PREDICTED: similar to hCG1774990 
MYPOP                 0.023   Myb protein P42POP 
LOC100292058          0.023   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.023   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.023   PREDICTED: hypothetical protein XP_002343287 
BASP1                 0.023   brain abundant, membrane attached signal protein 1 [...
LOC100292062          0.023   PREDICTED: hypothetical protein XP_002346314 
LOC100287250          0.023   PREDICTED: hypothetical protein XP_002344493 
LOC100288568          0.021   PREDICTED: hypothetical protein XP_002343338 
LOC100292370          0.021   PREDICTED: hypothetical protein 
ZNF414                0.019   zinc finger protein 414 isoform 1 
FOXE3                 0.019   forkhead box E3 
SMURF2                0.019   SMAD specific E3 ubiquitin protein ligase 2 
CDK5R2                0.019   cyclin-dependent kinase 5, regulatory subunit 2 [Homo...
LOC100291624          0.019   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.019   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.019   PREDICTED: hypothetical protein XP_002342583 
GAS2L1                0.019   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.019   growth arrest-specific 2 like 1 isoform a 
LOC729570             0.017   PREDICTED: hypothetical protein 
LOC729570             0.017   PREDICTED: hypothetical protein 
LOC729570             0.017   PREDICTED: hypothetical protein 
MAGI1                 0.017   membrane associated guanylate kinase, WW and PDZ dom...
LOC100292172          0.017   PREDICTED: hypothetical protein 
LOC100293596          0.017   PREDICTED: similar to mucin 
LOC100289763          0.017   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.017   PREDICTED: hypothetical protein XP_002343623 
SPRED3                0.017   sprouty-related, EVH1 domain containing 3 isoform a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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