Guide to the Human Genome
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Name: SDK2 Sequence: fasta or formatted (2172aa) NCBI GI: 222352127
Description:

sidekick 2

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        146           2
 C cysteine            0.7         16           1
 D aspartate           4.0         86           2
 E glutamate           6.1        132           3
 F phenylalanine       2.7         59           1
 G glycine             7.0        153           2
 H histidine           1.8         39           1
 I isoleucine          5.3        116           3
 K lysine              3.6         78           2
 L leucine             7.6        166           3
 M methionine          1.3         29           2
 N asparagine          4.1         90           2
 P proline             7.9        172           3
 Q glutamine           4.1         89           2
 R arginine            6.1        132           2
 S serine              9.4        204           3
 T threonine           8.0        173           3
 V valine              7.9        171           3
 W tryptophan          2.0         43           2
 Y tyrosine            3.6         78           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sidekick 2 
SDK1                  0.593   sidekick 1 
LOC100134174          0.128   PREDICTED: similar to sidekick homolog 2 (chicken) ...
CNTN3                 0.070   contactin 3 
DSCAM                 0.070   Down syndrome cell adhesion molecule isoform CHD2-42...
DSCAML1               0.068   Down syndrome cell adhesion molecule like 1 
CNTN6                 0.066   contactin 6 
CNTN4                 0.065   contactin 4 isoform a precursor 
CNTN2                 0.059   contactin 2 precursor 
CNTN5                 0.057   contactin 5 isoform short 
CNTN5                 0.057   contactin 5 isoform long 
CHL1                  0.056   cell adhesion molecule with homology to L1CAM precur...
PTPRF                 0.055   protein tyrosine phosphatase, receptor type, F isof...
NRCAM                 0.055   neuronal cell adhesion molecule isoform A precursor ...
NRCAM                 0.055   neuronal cell adhesion molecule isoform B precursor ...
PTPRF                 0.054   protein tyrosine phosphatase, receptor type, F isof...
DCC                   0.052   deleted in colorectal carcinoma 
L1CAM                 0.051   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.051   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.051   L1 cell adhesion molecule isoform 1 precursor 
TTN                   0.051   titin isoform N2-A 
TTN                   0.051   titin isoform novex-2 
TTN                   0.051   titin isoform novex-1 
TTN                   0.051   titin isoform N2-B 
CNTN1                 0.050   contactin 1 isoform 2 precursor 
CNTN1                 0.050   contactin 1 isoform 1 precursor 
NEO1                  0.050   neogenin homolog 1 
CNTN4                 0.049   contactin 4 isoform c precursor 
NFASC                 0.049   neurofascin isoform 4 precursor 
NFASC                 0.049   neurofascin isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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