Guide to the Human Genome
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Name: LOC646021 Sequence: fasta or formatted (246aa) NCBI GI: 239751271
Description:

PREDICTED: similar to hCG1774990

Not currently referenced in the text

Other entries for this name:
alt prot {280aa} PREDICTED: similar to hCG1774990
alt prot {280aa} PREDICTED: similar to hCG1774990
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         32           2
 C cysteine            1.2          3           1
 D aspartate           4.1         10           2
 E glutamate           2.8          7           2
 F phenylalanine       2.8          7           2
 G glycine             6.9         17           2
 H histidine           2.0          5           1
 I isoleucine          4.1         10           1
 K lysine              3.7          9           1
 L leucine             6.5         16           2
 M methionine          0.8          2           1
 N asparagine          2.4          6           1
 P proline             8.5         21           2
 Q glutamine           5.7         14           1
 R arginine           13.4         33           3
 S serine              9.8         24           2
 T threonine           3.3          8           1
 V valine              6.5         16           2
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1774990 
LOC646021             0.936   PREDICTED: similar to hCG1774990 
LOC646021             0.936   PREDICTED: similar to hCG1774990 
MYPOP                 0.026   Myb protein P42POP 
LOC100292370          0.026   PREDICTED: hypothetical protein 
LOC100292058          0.026   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.026   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.026   PREDICTED: hypothetical protein XP_002343287 
BASP1                 0.026   brain abundant, membrane attached signal protein 1 [...
LOC100292062          0.026   PREDICTED: hypothetical protein XP_002346314 
LOC100287250          0.026   PREDICTED: hypothetical protein XP_002344493 
LOC100288568          0.024   PREDICTED: hypothetical protein XP_002343338 
ZNF414                0.021   zinc finger protein 414 isoform 1 
FOXE3                 0.021   forkhead box E3 
SMURF2                0.021   SMAD specific E3 ubiquitin protein ligase 2 
CDK5R2                0.021   cyclin-dependent kinase 5, regulatory subunit 2 [Homo...
LOC100291624          0.021   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.021   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.021   PREDICTED: hypothetical protein XP_002342583 
GAS2L1                0.021   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.021   growth arrest-specific 2 like 1 isoform a 
LOC729570             0.019   PREDICTED: hypothetical protein 
LOC729570             0.019   PREDICTED: hypothetical protein 
LOC729570             0.019   PREDICTED: hypothetical protein 
MAGI1                 0.019   membrane associated guanylate kinase, WW and PDZ dom...
LOC100292172          0.019   PREDICTED: hypothetical protein 
LOC100293596          0.019   PREDICTED: similar to mucin 
LOC100289763          0.019   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.019   PREDICTED: hypothetical protein XP_002343623 
SPRED3                0.019   sprouty-related, EVH1 domain containing 3 isoform a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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