Guide to the Human Genome
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Name: LOC100132738 Sequence: fasta or formatted (1090aa) NCBI GI: 239753106
Description:

PREDICTED: similar to hCG1817845

Not currently referenced in the text

Other entries for this name:
alt prot {572aa} PREDICTED: similar to hCG1817845
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         95           2
 C cysteine            0.9         10           1
 D aspartate           6.0         65           2
 E glutamate           1.1         12           1
 F phenylalanine       2.5         27           1
 G glycine            10.8        118           2
 H histidine           8.6         94           2
 I isoleucine          3.0         33           1
 K lysine              1.1         12           2
 L leucine             7.8         85           3
 M methionine          1.2         13           1
 N asparagine          0.6          6           1
 P proline             6.5         71           2
 Q glutamine           4.8         52           1
 R arginine            8.2         89           2
 S serine              8.7         95           2
 T threonine          13.7        149           2
 V valine              2.3         25           2
 W tryptophan          1.0         11           1
 X unknown             0.2          2           1
 Y tyrosine            2.4         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1817845 
LOC100132738          0.438   PREDICTED: similar to hCG1817845 
FLG2                  0.039   filaggrin family member 2 
HRNR                  0.022   hornerin 
FLG                   0.019   filaggrin 
MUC12                 0.013   PREDICTED: mucin 12 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
MUC6                  0.011   mucin 6, gastric 
LOC100130716          0.009   PREDICTED: similar to mucin 11 
MUC12                 0.009   PREDICTED: mucin 12 
MUC5AC                0.008   mucin 5AC 
LOC100133761          0.008   PREDICTED: similar to Mucin-6, partial 
LOC100133714          0.008   PREDICTED: similar to Mucin-12, partial 
FAM65A                0.008   hypothetical protein LOC79567 
MUC5B                 0.007   mucin 5, subtype B, tracheobronchial 
CATSPER1              0.005   sperm-associated cation channel 1 
LOC729792             0.005   PREDICTED: hypothetical protein 
LOC729792             0.005   PREDICTED: hypothetical protein 
LOC729792             0.005   PREDICTED: hypothetical protein 
LOC100294501          0.005   PREDICTED: hypothetical protein 
LOC100294249          0.005   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.005   PREDICTED: hypothetical protein 
LOC100294204          0.005   PREDICTED: hypothetical protein 
LOC100294136          0.005   PREDICTED: hypothetical protein 
LOC100294091          0.005   PREDICTED: hypothetical protein 
LOC730401             0.005   PREDICTED: hypothetical protein 
DYRK1A                0.005   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.005   dual-specificity tyrosine-(Y)-phosphorylation regula...
PICALM                0.004   phosphatidylinositol-binding clathrin assembly prote...
LOC100130716          0.004   PREDICTED: similar to Mucin-12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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