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Search of human proteins with 11140823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 630 0.0
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 189 3e-48
gi|23238202 tumor necrosis factor receptor superfamily, member 1... 189 3e-48
gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] 65 5e-11
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 56 3e-08
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 56 3e-08
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 49 4e-06
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 48 9e-06
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 48 1e-05
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 48 1e-05
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 46 5e-05
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 43 3e-04
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 43 3e-04
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 41 0.001
gi|148743793 osteoprotegerin precursor [Homo sapiens] 40 0.002
gi|148886654 polydom [Homo sapiens] 39 0.006
gi|194097332 ephrin receptor EphB6 precursor [Homo sapiens] 37 0.027
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 37 0.027
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 36 0.047
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 35 0.079
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 35 0.10
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor... 34 0.14
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 34 0.14
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 34 0.14
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 34 0.14
gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens] 34 0.18
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 34 0.18
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 34 0.18
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 34 0.18
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 34 0.18
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 630 bits (1624), Expect = 0.0
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS 60
MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS
Sbjct: 1 MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQS 60
Query: 61 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF 120
CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF
Sbjct: 61 CITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAF 120
Query: 121 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA 180
QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA
Sbjct: 121 QLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEA 180
Query: 181 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT 240
DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT
Sbjct: 181 DKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCT 240
Query: 241 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP 297
SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP
Sbjct: 241 SESHSHWVHSPIECTELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP 297
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 189 bits (480), Expect = 3e-48
Identities = 86/196 (43%), Positives = 116/196 (59%)
Query: 2 DCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
DC++ E+ D+ G CV C +CGPG ELSK+CG+G G DA C C R+K WG +C+ C
Sbjct: 33 DCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPC 92
Query: 62 ITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAFQ 121
+ CAV+NR QK NC+ATS+A+CGDCLP FYRKT++ G QD EC+PC P E CA +
Sbjct: 93 LDCAVVNRFQKANCSATSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPPPYEPHCASK 152
Query: 122 LSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEAD 181
++LV+ + P++ L A++ S L LA L L +YCK+ F L +
Sbjct: 153 VNLVKIASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQDIQ 212
Query: 182 KTAKEESLFPVPPSKE 197
E S F P E
Sbjct: 213 YNGSELSCFDRPQLHE 228
>gi|23238202 tumor necrosis factor receptor superfamily, member 19
isoform 1 precursor [Homo sapiens]
Length = 423
Score = 189 bits (480), Expect = 3e-48
Identities = 86/196 (43%), Positives = 116/196 (59%)
Query: 2 DCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
DC++ E+ D+ G CV C +CGPG ELSK+CG+G G DA C C R+K WG +C+ C
Sbjct: 33 DCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPC 92
Query: 62 ITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAFQ 121
+ CAV+NR QK NC+ATS+A+CGDCLP FYRKT++ G QD EC+PC P E CA +
Sbjct: 93 LDCAVVNRFQKANCSATSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPPPYEPHCASK 152
Query: 122 LSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEAD 181
++LV+ + P++ L A++ S L LA L L +YCK+ F L +
Sbjct: 153 VNLVKIASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQDIQ 212
Query: 182 KTAKEESLFPVPPSKE 197
E S F P E
Sbjct: 213 YNGSELSCFDRPQLHE 228
>gi|11641231 ectodysplasin A receptor precursor [Homo sapiens]
Length = 448
Score = 65.5 bits (158), Expect = 5e-11
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 2 DCQENEYWDQW-GRCVTCQRCGPGQELSKDCGYGEGGDAY-CTACPPRRYKSSWGHHRCQ 59
+C ENEY++Q G C C CGPG+E CGYG + Y C CP ++ S G+ C+
Sbjct: 30 NCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKF-SKGGYQICR 88
Query: 60 SCITCAVINRVQKVNCTATSN-AVCGDCLPRFYR-KTRIGGLQDQECIPCTKQTPTSEVQ 117
C R + N A CG CLP +Y + R + C C P ++ +
Sbjct: 89 RHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-E 147
Query: 118 CAFQLSLVEADAP 130
C S A+ P
Sbjct: 148 CVGATSGASANFP 160
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 56.2 bits (134), Expect = 3e-08
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 17 TCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRVQKVNCT 76
T +C PG+E D G G C CPP + ++WG CQ C++ R++
Sbjct: 28 TLWQCPPGEEPDLDPGQG----TLCRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGM 83
Query: 77 ATSNAVCGDCLPRFYRKTRIGGLQDQECIPCT 108
AT + +CGDC P ++ G+ C PC+
Sbjct: 84 ATRDTLCGDCWPGWFGP---WGVPRVPCQPCS 112
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 56.2 bits (134), Expect = 3e-08
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 17 TCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRVQKVNCT 76
T +C PG+E D G G C CPP + ++WG CQ C++ R++
Sbjct: 28 TLWQCPPGEEPDLDPGQG----TLCRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGM 83
Query: 77 ATSNAVCGDCLPRFYRKTRIGGLQDQECIPCT 108
AT + +CGDC P ++ G+ C PC+
Sbjct: 84 ATRDTLCGDCWPGWFGP---WGVPRVPCQPCS 112
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 49.3 bits (116), Expect = 4e-06
Identities = 39/107 (36%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCI 62
C E YW Q C CQ C PG L KDC A C C P S HH C
Sbjct: 27 CPERHYWAQGKLC--CQMCEPGTFLVKDCDQHRKA-AQCDPCIP-GVSFSPDHHTRPHCE 82
Query: 63 TCAVINRVQKV-NCTATSNAVCGDCLPRFYRKTRIG-GLQDQECIPC 107
+C N V NCT T+NA C R G +D+EC C
Sbjct: 83 SCRHCNSGLLVRNCTITANAECA---------CRNGWQCRDKECTEC 120
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 48.1 bits (113), Expect = 9e-06
Identities = 72/309 (23%), Positives = 107/309 (34%), Gaps = 65/309 (21%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR-CQSC 61
C + +Y + C +C G L DC G G D C C + +S H R C SC
Sbjct: 44 CPQGKYIHPQNNSICCTKCHKGTYLYNDCP-GPGQDTDCRECESGSFTASENHLRHCLSC 102
Query: 62 ITC-AVINRVQKVNCTATSNAVCGDCLPRFYR-------------KTRIGG--------- 98
C + +V+ +CT + VCG C YR + G
Sbjct: 103 SKCRKEMGQVEISSCTVDRDTVCG-CRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEK 161
Query: 99 ------------LQDQECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSL 146
L++ EC+ C+ + E +L L + + T V L L
Sbjct: 162 QNTVCTCHAGFFLRENECVSCSNCKKSLE---CTKLCLPQIENVKGTEDSGTTVLL--PL 216
Query: 147 LVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETSAESQVSE 206
++ F L L L F+ + R + L K+ P KE E
Sbjct: 217 VIFFGLCLLSLLFIGLMYRYQR--WKSKLYSIVCGKST---------PEKEGELEGTT-- 263
Query: 207 NIFQTQPLNPILEDDCSSTSGF-PTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSS 265
T+PL P S T GF PT + S T S S ++P +C + +
Sbjct: 264 ----TKPLAP--NPSFSPTPGFTPTLGFSPVPSSTFTSSS--TYTPGDCPNFAAPRREVA 315
Query: 266 ASYTGAETL 274
Y GA+ +
Sbjct: 316 PPYQGADPI 324
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 47.8 bits (112), Expect = 1e-05
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH-HRCQSC 61
C+ EY+DQ + + C +C PGQ C + D C +C Y W C SC
Sbjct: 40 CRLREYYDQTAQ-MCCSKCSPGQHAKVFCT--KTSDTVCDSCEDSTYTQLWNWVPECLSC 96
Query: 62 ITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQE----CIPCTKQTP----- 112
+ ++V+ CT N +C C P +Y L QE C P K P
Sbjct: 97 GSRCSSDQVETQACTREQNRIC-TCRPGWY-----CALSKQEGCRLCAPLRKCRPGFGVA 150
Query: 113 -----TSEVQC 118
TS+V C
Sbjct: 151 RPGTETSDVVC 161
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 42 TACPPRRYKSSWGHHRCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQD 101
+ C R Y C C + KV CT TS+ VC C Y T++
Sbjct: 38 STCRLREYYDQTAQMCCSKCSP----GQHAKVFCTKTSDTVCDSCEDSTY--TQLWNWV- 90
Query: 102 QECIPCTKQTPTSEVQ 117
EC+ C + + +V+
Sbjct: 91 PECLSCGSRCSSDQVE 106
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 47.8 bits (112), Expect = 1e-05
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSW-GHHRCQSC 61
C+E+EY C C +C PG + + CG G C CPP Y + G +C C
Sbjct: 42 CKEDEY-PVGSEC--CPKCSPGYRVKEACGELTG--TVCEPCPPGTYIAHLNGLSKCLQC 96
Query: 62 ITC--AVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQ 117
C A+ R + NC+ T NAVCG C P + + G C C +S Q
Sbjct: 97 QMCDPAMGLRASR-NCSRTENAVCG-CSPGHFCIVQDG----DHCAACRAYATSSPGQ 148
Score = 29.3 bits (64), Expect = 4.4
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 10 DQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCA 65
D C PGQ + K G E D C CPP + + CQ C+
Sbjct: 133 DHCAACRAYATSSPGQRVQK--GGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCS 186
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 45.8 bits (107), Expect = 5e-05
Identities = 78/339 (23%), Positives = 120/339 (35%), Gaps = 68/339 (20%)
Query: 4 QENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR-CQSCI 62
QE EY++ R + C RC PG +S C D C C Y W + CQ C
Sbjct: 46 QEKEYYEPQHR-ICCSRCPPGTYVSAKC--SRIRDTVCATCAENSYNEHWNYLTICQLCR 102
Query: 63 TCAVINRVQKV-NCTATSNAVC---------------------GDCLPRFYRKTRIG-GL 99
C + ++++ CT+ C DC P + + G
Sbjct: 103 PCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGK 162
Query: 100 QDQECIPC------TKQTPTSEVQ----CAFQLSLVEAD--------------APTVPPQ 135
+ C+PC +P++ Q C Q LVEA P P
Sbjct: 163 GNNHCVPCKAGHFQNTSSPSARCQPHTRCENQ-GLVEAAPGTAQSDTTCKNPLEPLPPEM 221
Query: 136 EATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPS 195
T++ L L + F L +F K + + G LL+ + + E PV S
Sbjct: 222 SGTMLMLAVLLPLAFFLLLATVFSCIWKSHPSLCRKLGSLLK----RRPQGEGPNPVAGS 277
Query: 196 KETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECT 255
E ++ QPL PI D ++G P A+ E+ SP++ T
Sbjct: 278 WEPPKAHPYFPDL--VQPLLPISGDVSPVSTGLP-------AAPVLEAGVPQQQSPLDLT 328
Query: 256 ---ELDLQKFSSSASYTGAETLGGNTVESTGDRLELNVP 291
+L+ + S A T + G ++ TG+ N P
Sbjct: 329 REPQLEPGEQSQVAHGTNGIHVTGGSMTITGNIYIYNGP 367
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH-HRCQSCITCAVINRVQ 71
G + C +C PG + + C C CPPR Y W + RC+ C +
Sbjct: 44 GERLVCAQCPPGTFVQRPCR--RDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE 101
Query: 72 KVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIP----CTKQTPTSEVQC 118
C AT N C C F+ L+ C P TP+ QC
Sbjct: 102 ARACHATHNRAC-RCRTGFFAHAGF-CLEHASCPPGAGVIAPGTPSQNTQC 150
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH-HRCQSCITCAVINRVQ 71
G + C +C PG + + C C CPPR Y W + RC+ C +
Sbjct: 44 GERLVCAQCPPGTFVQRPCR--RDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE 101
Query: 72 KVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIP----CTKQTPTSEVQC 118
C AT N C C F+ L+ C P TP+ QC
Sbjct: 102 ARACHATHNRAC-RCRTGFFAHAGF-CLEHASCPPGAGVIAPGTPSQNTQC 150
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHH-RC--- 58
C ++++ GRC C +C PG+ +S C D+ C C P Y SW +C
Sbjct: 34 CTSEKHYEHLGRC--CNKCEPGKYMSSKCT--TTSDSVCLPCGPDEYLDSWNEEDKCLLH 89
Query: 59 QSCITCAVINRVQKVNCTATSNAVC 83
+ C T + V N T C
Sbjct: 90 KVCDTGKALVAVVAGNSTTPRRCAC 114
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 3 CQENEYWDQWGRCVTCQR---CGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH-HRC 58
C +W Q C C+R C PG + D C C + ++ +C
Sbjct: 114 CTAGYHWSQ--DCECCRRNTECAPGLGAQHPLQLNK--DTVCKPCLAGYFSDAFSSTDKC 169
Query: 59 QSCITCAVINRVQKVNCTATSNAVCGDCLP 88
+ C + + + + T S+AVC LP
Sbjct: 170 RPWTNCTFLGKRVEHHGTEKSDAVCSSSLP 199
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 8 YWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCA-V 66
Y ++ + C +C PG L + C C CP Y SW H C+ C+ V
Sbjct: 31 YDEETSHQLLCDKCPPGTYLKQHC--TAKWKTVCAPCPDHYYTDSW--HTSDECLYCSPV 86
Query: 67 INRVQ--KVNCTATSNAVC 83
+Q K C T N VC
Sbjct: 87 CKELQYVKQECNRTHNRVC 105
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 38.9 bits (89), Expect = 0.006
Identities = 22/74 (29%), Positives = 29/74 (39%)
Query: 10 DQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINR 69
D+ G C G + + + YG+G CTACP YK SCI C N
Sbjct: 289 DRMGSCKCGTHTGHFECICEKGYYGKGLQYECTACPSGTYKPEGSPGGISSCIPCPDENH 348
Query: 70 VQKVNCTATSNAVC 83
T+ + VC
Sbjct: 349 TSPPGSTSPEDCVC 362
Score = 28.1 bits (61), Expect = 9.7
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELS-------KDCG-------YGEGGDAYCTACPPRR 48
C+ Y D+ G+ + C+ C G DC Y G C +CP
Sbjct: 1018 CRIGSYQDEEGQ-LECKLCPSGMYTEYIHSRNISDCKAQCKQGTYSYSGLETCESCPLGT 1076
Query: 49 YKSSWGHHRCQSC 61
Y+ +G C SC
Sbjct: 1077 YQPKFGSRSCLSC 1089
>gi|194097332 ephrin receptor EphB6 precursor [Homo sapiens]
Length = 1021
Score = 36.6 bits (83), Expect = 0.027
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 11 QWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRV 70
+W V RC PG + ++ GD C ACP YKSS G+ C C
Sbjct: 291 KWMVAVGGCRCQPGYQPAR-------GDKACQACPRGLYKSSAGNAPCSPC--------P 335
Query: 71 QKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCT 108
+ + + VC CL FYR + D PCT
Sbjct: 336 ARSHAPNPAAPVC-PCLEGFYRAS-----SDPPEAPCT 367
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 36.6 bits (83), Expect = 0.027
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 58 CQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPT---- 113
CQ C+ C ++R ++ C+ CG CLP FY C+ C P+
Sbjct: 138 CQPCLDCGALHRHTRLLCSRRDTD-CGTCLPGFYE-------HGDGCVSCPTPPPSLAGA 189
Query: 114 --SEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFTLAF 154
VQ A LS V V + L LV LL+ TL +
Sbjct: 190 PWGAVQSAVPLS-VAGGRVGVFWVQVLLAGLVVPLLLGATLTY 231
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 35.8 bits (81), Expect = 0.047
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 58 CQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTS--- 114
CQ C+ C ++R ++ C+ CG CLP FY C+ C T S
Sbjct: 138 CQPCLDCGALHRHTRLLCSRRDTD-CGTCLPGFYE-------HGDGCVSCPTSTLGSCPE 189
Query: 115 --EVQCAFQLSLVEADAPTVPP 134
C ++ + +A T PP
Sbjct: 190 RCAAVCGWRQNEAGMEALTPPP 211
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 35.0 bits (79), Expect = 0.079
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 23 PGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRVQKVNCTATSNAV 82
PG ++ C G G C P Y G RC +C++C+ + V+K C S+
Sbjct: 225 PGLSPTQPCPEGSGDCR--KQCEPDYYLDEAG--RCTACVSCSRDDLVEKTPCAWNSSRT 280
Query: 83 CGDCLPRFYRKTRIGGLQDQECIP---CTKQTPTSEVQCAFQLSLVEA 127
C +C P T + C+P C +T T A + + EA
Sbjct: 281 C-ECRPGMICATSATNSR-ARCVPYPICAAETVTKPQDMAEKDTTFEA 326
Score = 33.1 bits (74), Expect = 0.30
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 14 RCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRVQKV 73
RC C RC G ++ C + C P Y RC +C+TC+ + V+K
Sbjct: 43 RC--CYRCPMGLFPTQQCP--QRPTDCRKQCEPDYYLDE--ADRCTACVTCSRDDLVEKT 96
Query: 74 NCTATSNAVCGDCLPRFYRKT 94
C S+ VC +C P + T
Sbjct: 97 PCAWNSSRVC-ECRPGMFCST 116
Score = 30.4 bits (67), Expect = 2.0
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSK-DCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
C+ + Y D+ RC C C + K C + + C P + S+ + C C
Sbjct: 69 CEPDYYLDEADRCTACVTCSRDDLVEKTPCAW---NSSRVCECRPGMFCSTSAVNSCARC 125
Query: 62 ITCAV--INRVQKVNCTATSNAVCGDCLP 88
+V + K TA N VC P
Sbjct: 126 FFHSVCPAGMIVKFPGTAQKNTVCEPASP 154
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.10
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRY-KSSWGHHRCQSCITCAVINRVQ 71
G+ +TC +C G +S+ C C++CP + + G +C C ++
Sbjct: 62 GQVLTCDKCPAGTYVSEHC--TNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIE 119
Query: 72 KVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCT----------KQTPTSEVQC 118
K+ C A ++ C C P ++ + C P T K T T +V+C
Sbjct: 120 KLPCAALTDREC-TCPPGMFQ-------SNATCAPHTVCPVGWGVRKKGTETEDVRC 168
>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
preproprotein [Homo sapiens]
Length = 863
Score = 34.3 bits (77), Expect = 0.14
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 142 LVSSLLVVFTLAFLGLFFLYCKQFFNRHCQ-RGGLLQFEADKTAKEESLFPVPPSKETSA 200
L+ SLLV+ L LG + Y + R CQ +G Q+ A ++ E P PP + A
Sbjct: 698 LLLSLLVLLVLVMLGASYWYRARLHQRLCQLKGPTCQYRAAQSGPSER--PGPPQRALLA 755
Query: 201 E--SQVSENIFQTQPLNPILEDDCS 223
Q S F P P+ D S
Sbjct: 756 RGTKQASALSFPAPPSRPLPPDPVS 780
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 34.3 bits (77), Expect = 0.14
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 142 LVSSLLVVFTLAFLGLFFLYCKQFFNRHCQ-RGGLLQFEADKTAKEESLFPVPPSKETSA 200
L+ SLLV+ L LG + Y + R CQ +G Q+ A ++ E P PP + A
Sbjct: 698 LLLSLLVLLVLVMLGASYWYRARLHQRLCQLKGPTCQYRAAQSGPSER--PGPPQRALLA 755
Query: 201 E--SQVSENIFQTQPLNPILEDDCS 223
Q S F P P+ D S
Sbjct: 756 RGTKQASALSFPAPPSRPLPPDPVS 780
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 34.3 bits (77), Expect = 0.14
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 58 CQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQT 111
CQ C+ C ++R ++ C+ CG CLP FY C+ C T
Sbjct: 93 CQPCLDCGALHRHTRLLCSRRDTD-CGTCLPGFYE-------HGDGCVSCPTST 138
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 34.3 bits (77), Expect = 0.14
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 58 CQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQT 111
CQ C+ C ++R ++ C+ CG CLP FY C+ C T
Sbjct: 138 CQPCLDCGALHRHTRLLCSRRDTD-CGTCLPGFYE-------HGDGCVSCPTST 183
>gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens]
Length = 293
Score = 33.9 bits (76), Expect = 0.18
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 3 CQENEYWDQW-GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
C E +YWD G C++C+ Q + C A+C + R+ + + H + C
Sbjct: 34 CPEEQYWDPLLGTCMSCKTICNHQS-QRTCA------AFCRSLSCRKEQGKFYDHLLRDC 86
Query: 62 ITCAVI 67
I+CA I
Sbjct: 87 ISCASI 92
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 33.9 bits (76), Expect = 0.18
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWG-------H 55
C+E +Y +C C C PGQ+L DC E + C C + +W H
Sbjct: 26 CREKQYLIN-SQC--CSLCQPGQKLVSDC--TEFTETECLPCGESEFLDTWNRETHCHQH 80
Query: 56 HRCQSCI-----------TCAVINRVQKVNCTATSNAVC---GDCLPRFYRKTRIGGLQD 101
C + T + + +CT+ + C C P F K G+ D
Sbjct: 81 KYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSD 140
Query: 102 QECIPC 107
C PC
Sbjct: 141 TICEPC 146
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 33.9 bits (76), Expect = 0.18
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWG-------H 55
C+E +Y +C C C PGQ+L DC E + C C + +W H
Sbjct: 26 CREKQYLIN-SQC--CSLCQPGQKLVSDC--TEFTETECLPCGESEFLDTWNRETHCHQH 80
Query: 56 HRCQSCI-----------TCAVINRVQKVNCTATSNAVC---GDCLPRFYRKTRIGGLQD 101
C + T + + +CT+ + C C P F K G+ D
Sbjct: 81 KYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSD 140
Query: 102 QECIPC 107
C PC
Sbjct: 141 TICEPC 146
Score = 32.0 bits (71), Expect = 0.67
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 1 MDCQENEYWDQWGRCVTCQR---CGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHR 57
+ C E+E+ D W R C + C P L D CT C + +S
Sbjct: 60 LPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICT-CEEGWHCTS---EA 115
Query: 58 CQSCI---TCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTS 114
C+SC+ +C+ V+++ T S+ +C C F+ ++C P T+ ++
Sbjct: 116 CESCVLHRSCSPGFGVKQI-ATGVSDTICEPCPVGFFSNV---SSAFEKCHPWTRSPGSA 171
Query: 115 E 115
E
Sbjct: 172 E 172
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH--HRCQSCITCAVINRV 70
GRC+TC+ G + + C G G+ CPP R + H +C C + +R
Sbjct: 300 GRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHACNHVTGKCTRCNAGWIGDRC 359
Query: 71 QKVNCTATSNA----VCGDC 86
+ T VC DC
Sbjct: 360 ETKCSNGTYGEDCAFVCADC 379
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH--HRCQSCITCAVINRV 70
GRC+TC+ G + + C G G+ CPP R + H +C C + +R
Sbjct: 300 GRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHACNHVTGKCTRCNAGWIGDRC 359
Query: 71 QKVNCTATSNA----VCGDC 86
+ T VC DC
Sbjct: 360 ETKCSNGTYGEDCAFVCADC 379
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,098,580
Number of Sequences: 37866
Number of extensions: 604597
Number of successful extensions: 2152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 183
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.