Guide to the Human Genome
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Name: TNFRSF13B Sequence: fasta or formatted (293aa) NCBI GI: 6912694
Description:

tumor necrosis factor receptor 13B

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         20           2
 C cysteine            8.9         26           2
 D aspartate           3.4         10           1
 E glutamate           5.8         17           2
 F phenylalanine       2.7          8           1
 G glycine             8.5         25           2
 H histidine           2.4          7           1
 I isoleucine          1.7          5           1
 K lysine              3.1          9           2
 L leucine             7.8         23           2
 M methionine          1.4          4           1
 N asparagine          2.0          6           2
 P proline             8.9         26           2
 Q glutamine           5.8         17           1
 R arginine            8.2         24           2
 S serine              9.9         29           2
 T threonine           4.8         14           2
 V valine              5.1         15           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor 13B 
LOC100292811          0.017   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.017   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.017   PREDICTED: hypothetical protein XP_002342982 
PEAR1                 0.017   platelet endothelial aggregation receptor 1 
LOC729213             0.017   PREDICTED: similar to ectonucleotide pyrophosphatas...
EDA2R                 0.015   X-linked ectodysplasin receptor 
RFX1                  0.013   regulatory factor X1 
LRP1                  0.013   low density lipoprotein-related protein 1 
FRAS1                 0.013   Fraser syndrome 1 
SRGAP1                0.012   SLIT-ROBO Rho GTPase activating protein 1 
BAZ2A                 0.012   bromodomain adjacent to zinc finger domain, 2A [Homo...
LOC100128074          0.012   PREDICTED: hypothetical protein 
TBX1                  0.012   T-box 1 isoform B 
TBX1                  0.012   T-box 1 isoform C 
TBX1                  0.012   T-box 1 isoform A 
TMEM91                0.012   transmembrane protein 91 isoform c 
TMEM91                0.012   transmembrane protein 91 isoform c 
LOC100288612          0.012   PREDICTED: hypothetical protein XP_002342081 
LOC100131696          0.010   PREDICTED: keratin associated protein 
LOC100288060          0.010   PREDICTED: hypothetical protein XP_002343557 
ZNFX1                 0.010   zinc finger, NFX1-type containing 1 
MUC19                 0.010   PREDICTED: mucin 19, oligomeric 
MUC19                 0.010   PREDICTED: mucin 19, oligomeric 
MUC19                 0.010   PREDICTED: mucin 19 
KIAA1602              0.010   hypothetical protein LOC57701 
FBXL22                0.010   F-box and leucine-rich repeat protein 22 
LOC100131696          0.008   PREDICTED: keratin associated protein 
FLJ10404              0.008   hypothetical protein LOC54540 
FAM123C               0.008   hypothetical protein LOC205147 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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