Guide to the Human Genome
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Name: EPHB6 Sequence: fasta or formatted (1021aa) NCBI GI: 194097332
Description:

ephrin receptor EphB6 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         96           3
 C cysteine            2.7         28           1
 D aspartate           3.7         38           2
 E glutamate           5.9         60           2
 F phenylalanine       3.5         36           1
 G glycine             9.3         95           4
 H histidine           3.0         31           2
 I isoleucine          2.4         25           1
 K lysine              2.0         20           2
 L leucine            10.3        105           3
 M methionine          1.4         14           1
 N asparagine          1.7         17           1
 P proline             7.0         71           4
 Q glutamine           6.3         64           2
 R arginine            6.4         65           2
 S serine              8.6         88          11
 T threonine           4.8         49           2
 V valine              7.4         76           2
 W tryptophan          1.8         18           1
 Y tyrosine            2.4         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphB6 precursor 
EPHB2                 0.442   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.442   ephrin receptor EphB2 isoform 2 precursor 
EPHB1                 0.440   ephrin receptor EphB1 precursor 
EPHB3                 0.417   ephrin receptor EphB3 precursor 
EPHA7                 0.369   ephrin receptor EphA7 
EPHB4                 0.368   EPH receptor B4 precursor 
EPHA4                 0.368   ephrin receptor EphA4 
EPHA3                 0.358   ephrin receptor EphA3 isoform a precursor 
EPHA5                 0.356   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.355   ephrin receptor EphA5 isoform a precursor 
EPHA8                 0.346   ephrin receptor EphA8 isoform 1 precursor 
EPHA6                 0.342   EPH receptor A6 isoform a 
EPHA2                 0.314   ephrin receptor EphA2 
EPHA10                0.313   EPH receptor A10 isofom 3 
EPHA1                 0.295   ephrin receptor EphA1 
EPHA3                 0.184   ephrin receptor EphA3 isoform b precursor 
EPHA8                 0.151   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.089   EPH receptor A10 isoform 2 
INSR                  0.078   insulin receptor isoform Short precursor 
INSR                  0.078   insulin receptor isoform Long precursor 
IGF1R                 0.074   insulin-like growth factor 1 receptor precursor [Homo...
MATK                  0.069   megakaryocyte-associated tyrosine kinase isoform c [...
MATK                  0.069   megakaryocyte-associated tyrosine kinase isoform b [...
MATK                  0.069   megakaryocyte-associated tyrosine kinase isoform a [...
INSRR                 0.068   insulin receptor-related receptor precursor 
PTK2                  0.067   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.067   PTK2 protein tyrosine kinase 2 isoform a 
SRC                   0.066   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.066   proto-oncogene tyrosine-protein kinase SRC 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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