Guide to the Human Genome
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Search of human proteins with 169168318

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168318 PREDICTED: similar to hCG1644658 [Homo sapiens]
         (59 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168318 PREDICTED: similar to hCG1644658 [Homo sapiens]          117   2e-27
gi|169168021 PREDICTED: similar to hCG1644658 [Homo sapiens]          117   2e-27
gi|239742642 PREDICTED: hypothetical protein XP_002342587 [Homo ...   117   2e-27
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]             95   1e-20
gi|169167838 PREDICTED: similar to hCG2002932 [Homo sapiens]           88   1e-18
gi|239748566 PREDICTED: similar to hCG2002932 [Homo sapiens]           88   1e-18
gi|239742549 PREDICTED: hypothetical protein LOC345645 [Homo sap...    88   1e-18
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]             50   3e-07
gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit ...    49   7e-07
gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo sapi...    49   7e-07
gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens]    49   7e-07
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]             48   2e-06
gi|5901990 katanin p60 subunit A 1 [Homo sapiens]                      42   8e-05
gi|157671927 spermatogenesis associated 5 [Homo sapiens]               42   1e-04
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]              41   2e-04
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]        39   0.001
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]                38   0.002
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]                38   0.002
gi|6005942 valosin-containing protein [Homo sapiens]                   38   0.002
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]            38   0.002
gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens]    34   0.022
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      33   0.038
gi|4505725 peroxin1 [Homo sapiens]                                     32   0.14 
gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase...    30   0.55 
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]      29   0.71 
gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]               27   2.7  
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]             27   3.5  
gi|31742536 fidgetin-like 1 [Homo sapiens]                             27   4.6  
gi|112789543 fidgetin-like 1 [Homo sapiens]                            27   4.6  
gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo...    26   7.9  

>gi|169168318 PREDICTED: similar to hCG1644658 [Homo sapiens]
          Length = 59

 Score =  117 bits (293), Expect = 2e-27
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
          MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59


>gi|169168021 PREDICTED: similar to hCG1644658 [Homo sapiens]
          Length = 59

 Score =  117 bits (293), Expect = 2e-27
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
          MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59


>gi|239742642 PREDICTED: hypothetical protein XP_002342587 [Homo
          sapiens]
          Length = 59

 Score =  117 bits (293), Expect = 2e-27
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
          MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1  MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59


>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
          Length = 440

 Score = 95.1 bits (235), Expect = 1e-20
 Identities = 47/48 (97%), Positives = 48/48 (100%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED+
Sbjct: 372 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 419


>gi|169167838 PREDICTED: similar to hCG2002932 [Homo sapiens]
          Length = 415

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394


>gi|239748566 PREDICTED: similar to hCG2002932 [Homo sapiens]
          Length = 415

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394


>gi|239742549 PREDICTED: hypothetical protein LOC345645 [Homo
           sapiens]
          Length = 415

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394


>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
          Length = 439

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYID 50
           M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+EDY++
Sbjct: 373 MNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 422


>gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit 4
           [Homo sapiens]
          Length = 414

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
           M L+++V L+D +   D +SGADI +IC E+G++A+RE R  V  +D+    K  I++
Sbjct: 348 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 405


>gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo
           sapiens]
          Length = 387

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
           M L+++V L+D +   D +SGADI +IC E+G++A+RE R  V  +D+    K  I++
Sbjct: 321 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 378


>gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens]
          Length = 418

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
           M L+++V L+D +   D +SGADI +IC E+G++A+RE R  V  +D+    K  I++
Sbjct: 352 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 409


>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
          Length = 406

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           M L   + L  +       SGA++K +CTEAG+ ALRERR+ VT ED+
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383


>gi|5901990 katanin p60 subunit A 1 [Homo sapiens]
          Length = 491

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEI 56
           + LADDV L  +    +  SGADI  +C +A LMA+R R   +T E+  + SK E+
Sbjct: 398 LELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEM 453


>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
          Length = 893

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRE 38
           M ++++V LD+LI+  D  SGA+I A+C EA L+AL E
Sbjct: 813 MPVSNEVDLDELILQTDAYSGAEIVAVCREAALLALEE 850



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 21  GADIKAICTEAGLMALRERRMKVTN 45
           GAD+K +C EAGL ALR    K  N
Sbjct: 561 GADLKVLCNEAGLCALRRILKKQPN 585


>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
          Length = 433

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 33/50 (66%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYID 50
           M++  D+  + L     + +GA+I+++CTEAG+ A+R RR   T +D+++
Sbjct: 362 MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLE 411


>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
          Length = 753

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSK 53
           M +  DV+L++L       SGAD++ +CTEA L+AL+E  +  T      F K
Sbjct: 669 MPIGPDVSLENLAAETCFFSGADLRNLCTEAALLALQENGLDATTVKQEHFLK 721


>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 3   LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIR 57
           L  D+ L+D+    +  SGADI  +C +A LMA+R R   ++ E+    SK E++
Sbjct: 399 LDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ 453


>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 3   LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIR 57
           L  D+ L+D+    +  SGADI  +C +A LMA+R R   ++ E+    SK E++
Sbjct: 399 LDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ 453


>gi|6005942 valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 47
           M LADDV L+ +        GAD+ A+C+EA L A+R++   +  ED
Sbjct: 388 MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 3   LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRE 38
           +A DV L+ L    +  SGAD+  IC  A  +A+RE
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701


>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
          Length = 403

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 1   MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYI 49
           +T   ++  + ++   D  +GAD++ +CTEAG+ A+R     V  ED++
Sbjct: 334 ITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFM 382


>gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens]
          Length = 1458

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 15/19 (78%), Positives = 17/19 (89%)

Query: 21  GADIKAICTEAGLMALRER 39
           GADIKA+CTEA L+ALR R
Sbjct: 610 GADIKALCTEAALIALRRR 628


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 6   DVTLDDLIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNED-YIDFSKIEI 56
           D  L++L        GADIK+IC EA L ALR R  ++  T+E   +D S I I
Sbjct: 621 DTFLEELAENCVGYCGADIKSICAEAALCALRRRYPQIYTTSEKLQLDLSSINI 674


>gi|4505725 peroxin1 [Homo sapiens]
          Length = 1283

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 1    MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMAL 36
            + LADDV L  +    D  +GAD+KA+   A L AL
Sbjct: 1024 LPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059


>gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
           [Homo sapiens]
          Length = 471

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 24  IKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
           I++IC + G++A   R++K+ + DYID  + ++ E
Sbjct: 157 IESICNDPGIIAENIRQVKLGSPDYIDCDREKVLE 191


>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
          Length = 361

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 7   VTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
           V L ++    D  SG+D+K +C +A L+ +RE     + E +
Sbjct: 282 VDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESH 323


>gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]
          Length = 795

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/24 (58%), Positives = 14/24 (58%)

Query: 20  SGADIKAICTEAGLMALRERRMKV 43
           SGADI  IC EA L A RE    V
Sbjct: 517 SGADIANICNEAALHAAREGHTSV 540


>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
          Length = 797

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 2   TLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 37
           TL  D     L       SGAD+  +C EA L+A R
Sbjct: 499 TLEKDKLARKLASLTPGFSGADVANVCNEAALIAAR 534


>gi|31742536 fidgetin-like 1 [Homo sapiens]
          Length = 674

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 9   LDDLIMAKDDLSGADIKAICTEAGLMALR 37
           ++ ++   D  SGAD+  +C EA L  +R
Sbjct: 593 IEQIVQQSDAFSGADMTQLCREASLGPIR 621


>gi|112789543 fidgetin-like 1 [Homo sapiens]
          Length = 674

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 9   LDDLIMAKDDLSGADIKAICTEAGLMALR 37
           ++ ++   D  SGAD+  +C EA L  +R
Sbjct: 593 IEQIVQQSDAFSGADMTQLCREASLGPIR 621


>gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo
          sapiens]
          Length = 597

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 20 SGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEI 56
          S A+IKAI  +A  +  + +R  +  ED+I++ + EI
Sbjct: 26 SHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEI 62


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,664,503
Number of Sequences: 37866
Number of extensions: 43581
Number of successful extensions: 134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 33
length of query: 59
length of database: 18,247,518
effective HSP length: 32
effective length of query: 27
effective length of database: 17,035,806
effective search space: 459966762
effective search space used: 459966762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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