Guide to the Human Genome
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Name: LOC100131531 Sequence: fasta or formatted (59aa) NCBI GI: 169168318
Description:

PREDICTED: similar to hCG1644658

Not currently referenced in the text

Other entries for this name:
alt mRNA {59aa} PREDICTED: similar to hCG1644658
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2          6           1
 C cysteine            1.7          1           1
 D aspartate          15.3          9           2
 E glutamate           8.5          5           1
 F phenylalanine       1.7          1           1
 G glycine             5.1          3           1
 H histidine           0.0          0           0
 I isoleucine         10.2          6           1
 K lysine              6.8          4           1
 L leucine            10.2          6           1
 M methionine          6.8          4           1
 N asparagine          1.7          1           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            6.8          4           2
 S serine              3.4          2           1
 T threonine           6.8          4           1
 V valine              3.4          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644658 
LOC100131531          1.000   PREDICTED: similar to hCG1644658 
LOC100287833          1.000   PREDICTED: hypothetical protein XP_002342587 
PSMC1                 0.761   proteasome 26S ATPase subunit 1 
LOC345645             0.685   PREDICTED: similar to hCG2002932 
LOC345645             0.685   PREDICTED: similar to hCG2002932 
LOC345645             0.685   PREDICTED: hypothetical protein LOC345645 
PSMC3                 0.272   proteasome 26S ATPase subunit 3 
LOC652826             0.261   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.261   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.261   proteasome 26S ATPase subunit 4 isoform 1 
PSMC5                 0.250   proteasome 26S ATPase subunit 5 
KATNA1                0.185   katanin p60 subunit A 1 
SPATA5                0.185   spermatogenesis associated 5 
PSMC2                 0.174   proteasome 26S ATPase subunit 2 
SPATA5L1              0.152   spermatogenesis associated 5-like 1 
KATNAL1               0.141   katanin p60 subunit A-like 1 
KATNAL1               0.141   katanin p60 subunit A-like 1 
VCP                   0.141   valosin-containing protein 
PSMC6                 0.141   proteasome 26S ATPase subunit 6 
ATAD2B                0.098   ATPase family, AAA domain containing 2B 
ATAD2                 0.087   ATPase family, AAA domain containing 2 
PEX1                  0.076   peroxin1 
PFKFB1                0.054   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase...
ATAD1                 0.043   ATPase family, AAA domain containing 1 
SPG7                  0.022   spastic paraplegia 7 isoform 1 
AFG3L2                0.022   AFG3 ATPase family gene 3-like 2 
FIGNL1                0.022   fidgetin-like 1 
FIGNL1                0.022   fidgetin-like 1 
UTP6                  0.011   hepatocellular carcinoma-associated antigen 66 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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