Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132679 Sequence: fasta or formatted (292aa) NCBI GI: 239745999
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          8           2
 C cysteine            8.2         24           1
 D aspartate           2.1          6           1
 E glutamate           0.3          1           1
 F phenylalanine       1.4          4           1
 G glycine             1.4          4           1
 H histidine           8.2         24           1
 I isoleucine         13.4         39           1
 K lysine              2.1          6           3
 L leucine             5.1         15           1
 M methionine          7.9         23           1
 N asparagine          0.3          1           1
 P proline             3.8         11           2
 Q glutamine           2.7          8           1
 R arginine            2.4          7           2
 S serine              0.7          2           1
 T threonine           6.8         20           1
 V valine              9.6         28           1
 W tryptophan          0.0          0           0
 Y tyrosine           20.9         61           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.353   PREDICTED: hypothetical protein 
LOC100129642          0.339   PREDICTED: hypothetical protein 
LOC100134060          0.339   PREDICTED: hypothetical protein 
LOC100131203          0.329   PREDICTED: hypothetical protein 
LOC100131203          0.328   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.328   PREDICTED: similar to serine/threonine-protein kina...
LOC100132016          0.315   PREDICTED: hypothetical protein 
LOC100134411          0.313   PREDICTED: hypothetical protein 
LOC100132107          0.307   PREDICTED: hypothetical protein 
LOC100134730          0.305   PREDICTED: hypothetical protein 
LOC100291751          0.299   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100133450          0.299   PREDICTED: hypothetical protein, partial 
LOC100287975          0.299   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100133515          0.296   PREDICTED: hypothetical protein 
LOC100134279          0.294   PREDICTED: hypothetical protein, partial 
LOC100288317          0.294   PREDICTED: hypothetical protein XP_002342505 
LOC100132983          0.294   PREDICTED: hypothetical protein 
LOC100293574          0.294   PREDICTED: hypothetical protein, partial 
LOC100293155          0.291   PREDICTED: hypothetical protein 
LOC100133807          0.291   PREDICTED: similar to serine/threonine-protein kina...
LOC100129825          0.290   PREDICTED: hypothetical protein 
LOC100132016          0.288   PREDICTED: hypothetical protein 
LOC100133844          0.282   PREDICTED: hypothetical protein 
LOC100132782          0.280   PREDICTED: hypothetical protein 
LOC100133741          0.278   PREDICTED: hypothetical protein 
LOC100134139          0.277   PREDICTED: hypothetical protein 
LOC100133173          0.277   PREDICTED: hypothetical protein 
LOC100134395          0.275   PREDICTED: hypothetical protein, partial 
LOC100132423          0.275   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press